Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02893 ATGGGGCAGCAACCTTATATTGGTTTAGGCACAGTAGCATGCCCTCGAAGAGGTAACAAAAACTCTATTCGTGGATACACTTGTAATGGTGCAAACAGCTGCCAAGCATTCCTTACTTTCAGATCTCAACCCATTTACGACTCTGTCTCCACAATATCTACTTTATTGGGTTCTGACCCCTCCGACCTTGCTAAAATAAATTCCGTTTCCCTGAATGACACCTTCGAAACAAACAAGTTGGTGCTTGTTCCGGTCAACTGTTCCTGTGCAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATGCAGAAACTTACTTCTTGGTTGCTAACAACACTTTCGAGGGCCTCACAACATGTCAAGCTTTGCAGAATCAAAACCACAACCCAGCAAACATATACCCCGGTAGAAAACTTCTAGTGCCTCTCCGATGTGCTTGCCCCACAAAAAACCAAACCGAGAAAGGCATCAAGTACCTCTTAAGCTACCTGGTGAATTGGGGTGATTCTGTTTCACTCATTGCTGAAAAATTTGGTGTTGGCTCTATGACCACTCTTCAGGCTAATAACCTCACTTTGACACAATCCATGATCTATCCCTTTACTACGCTTCTAATTCCCCTTCATGATAAGCCCTCAAGTTCTCAAACCGTTTCTCCAGCTCAACTTACGCCACCACCCTCATCACCCCCCTCTTCTCATAAAAAGAAAACATGGGTGTATGTTGTTGTTGGAGTTGTTGCAGGAGCTGCTGCCTTAACATCAGCTCTCTGTACTGTCATTTTCTTCACACGGAGGGGGAAAAATAGAAACGAAGATGATTCGATGGTAGTGTCAAGGAGTTTTGAGGCAACTAAGAAAAAACCACCAATGAGTTTAAATGAAAAATTGTCAGAGATCATATCTGGCATAGCTCAATCGTTCAAGGTTTATGATTTTGAGGAACTAAAGCGAGCAACAGATAACTTTAGTCCTAGCTACTGGATCAAAGGGTCTGTTTATCGCGGTGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGTGATGTGACAAAGGAGATGGAGATACTGAGCAAAATCAACCATTCGAATGTTGTACGCCTTTCCGGGGTTAGCTTCCACGAGGGACGTTGGTACTTTGTTTATGAGTATGCTGCTAATGGAGATTTGAGTGAATGGATCTACTTCAACAACGCGGATGGAAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTTGATTATCTTCACAGTTTCAGTTCTCCTTATATCCACAAGGATATTAAGAGTACTAACATTCTTCTGGATGGTCACTTCAGGGGAAAGGTTGCAAATTTAAGCCTTGTGAGGCGTGTGGAAGGAGGGGATGACCAGTTTCCTGCCACTAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCCGAGTATTTGGAACATGGTCTTGTGTCTACAAAGCTTGATGTGTATGCTTTTGGGGTAGTGATGCTGGAAATGATCACAGGAAAAGAGGTTGCTGCTATTGTAACAGAAGACGAGACAAACTTGTCACATGTTTTGCGAGTCATGCTTGGTGAGGAGAGTGGGCAGGAGAGGTTGAAGGAGTTTGTAGATCCCTCTTTGCGAGAAAATTTTCCGTTTGAACTTGGTATGTTTGTGGTTGAGATGATTGATAATTGCATATCGATTGATCCAGCAAGTCGTCCTAGTGTGCATGAGATTGTGCAATCTCTGTCAAGAACCCTGAATTCTTCATTGAGTTGGGATAGGTCAATGAATGTCCCACGAAGCTAA 1824 0.4315 MGQQPYIGLGTVACPRRGNKNSIRGYTCNGANSCQAFLTFRSQPIYDSVSTISTLLGSDPSDLAKINSVSLNDTFETNKLVLVPVNCSCAGEYYQTNTSYVFQNAETYFLVANNTFEGLTTCQALQNQNHNPANIYPGRKLLVPLRCACPTKNQTEKGIKYLLSYLVNWGDSVSLIAEKFGVGSMTTLQANNLTLTQSMIYPFTTLLIPLHDKPSSSQTVSPAQLTPPPSSPPSSHKKKTWVYVVVGVVAGAAALTSALCTVIFFTRRGKNRNEDDSMVVSRSFEATKKKPPMSLNEKLSEIISGIAQSFKVYDFEELKRATDNFSPSYWIKGSVYRGVINGDLAAIKKIEGDVTKEMEILSKINHSNVVRLSGVSFHEGRWYFVYEYAANGDLSEWIYFNNADGKFLSWTQRIQIALDVATGLDYLHSFSSPYIHKDIKSTNILLDGHFRGKVANLSLVRRVEGGDDQFPATRHIVGTRGYMAPEYLEHGLVSTKLDVYAFGVVMLEMITGKEVAAIVTEDETNLSHVLRVMLGEESGQERLKEFVDPSLRENFPFELGMFVVEMIDNCISIDPASRPSVHEIVQSLSRTLNSSLSWDRSMNVPRS 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02893 607 MobiDBLite consensus disorder prediction 214 237 - -
Vimu7g02893 607 Gene3D LysM domain 163 221 IPR036779 -
Vimu7g02893 607 Gene3D Phosphorylase Kinase; domain 1 297 388 - -
Vimu7g02893 607 SMART LysM_2 164 209 IPR018392 -
Vimu7g02893 607 SMART LysM_2 99 144 IPR018392 -
Vimu7g02893 607 Pfam LysM domain 165 209 IPR018392 -
Vimu7g02893 607 SUPERFAMILY Protein kinase-like (PK-like) 308 588 IPR011009 -
Vimu7g02893 607 ProSiteProfiles LysM domain profile. 163 208 IPR018392 -
Vimu7g02893 607 SMART serkin_6 330 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02893 607 Pfam Protein kinase domain 335 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02893 607 CDD LysM 164 208 IPR018392 -
Vimu7g02893 607 ProSiteProfiles Protein kinase domain profile. 304 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02893 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vimu7g02893 607 FunFam PTI1-like tyrosine-protein kinase 3 389 602 - -
Vimu7g02893 607 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 3 600 - -
Vimu7g02893 607 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02893 Vimu-Chr7 24401199 24403022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02893 2 601 Receptor kinase-like Gene Family AT2G23770 43.344 2.07e-165 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu7g02893 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02893 - - gmx:100815842 1001.89