Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02892 ATGGCTGCCTTGTTTGTTTCTCTTTCTCTCCGTGCCCAGATTCTTTATGTTGTACTCATGTTTTTCACTTGTATTGCAGCTCAATCAGAACAGACCAATGGAACAAACTTTTCATGCCCTTCCGATTCACCTCCTTCGTGTGAAACCTATGTGACATATATAACTCAGTCTCCAAATTTTTTGAGTGTGACCAGCGTATCTAATATATTTGACACGAGTCCTTTGAAAATTGCAAGAGCCAGCAACATAGAGAATGAGGAAGACAAGTTGATTCCAGGCCAAGTCTTACTGATACCAGTAACCTGTGGTTGCACTGGAAACCGCTATTTCGCCAATATCTCCTATGAAATCAACCCAGGTGATAGCTTCTACTTTGTTTCAACCACTTCATACCAGAATCTCACAAATTGGCATGTAGTGATGGATTTAAACCCCAGTCTAAGTCCATATACTTTGCCAGTAGGCATCCAAGTTGTAATTCCTTTATTCTGCAAGTGTCCTTCAAAGAACCAGCTTGACAGAGGGATAAAGTACCTGATCACTCACGTGTGGCAGCCCAGTGACAATGTTTCCCTCGTAAGCAACAAGTTTGGTGCATCACCAGAGGACATATTAAGTGAAAACAATTATGGTCAAAACTTCACTGCCGCAAACAACCTTCCAGTTTTGATCCCAGTTACACGCTTGCCAGATCTTATTCAATCTCCTTCAGATGGAAGAAAACACAGAATTGGTCTTCCAGTCATAATTGGTATCAGTCTGGGATGCACACTACTGGTTGTGGTTTCAGCAATATTACTGGTGTATGTATGTTTTCTGAAAATGAAGAGTTTGAATAGGAGTGCCTCATCACCTGAAACTGTAGATAAACTACTTTCTGGAGTTTCAGGCTACGTAAGTAAGCCTACCATGTATGAAACTGGTGCAATCTTGGAAGCTACCATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCCAACATAGACGGGAAGGTTTTAGCAATAAAAAGATTCAAGGAAGATGTCACGGAGGAGCTGAAAATTCTGCAGAAGGTGAGCCATGGAAATCTGGTGAAACTAATGGGTGTCTCATCAGACAATGATGGAAATTGTTTTGTGGTTTATGAATATGCAGAAAATAGGTCTCTTGATGACTGGCTTTTCGCCAAGTCTTGTTCAGAGACATCAAACTCAAGGACCACGCTTACATGGTGCCAGAGGATAGGCATAGCAGTGGATGTTGCAATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACCAGCAGTAATATCCTTCTTGACTCTAACTTCAAGGCCAAGATAGCAAATTTTTCCATGGCCAGAACTTTTACCAATCCCATGATGTCAAAAATAGATGTATTTGCTTTTGGGGTGGTTCTGATAGAATTACTTACTGGCAAGAAAGCCATGACAACCAAAGATAATGGTGAGGTGGTTATGCTGTGGAAGGAAATTTGGAAGATCTTTGATCAAGAAGAGAATAGAGAGGAGAGGCTCAGAAAATGGATGGATCCTAAGTTAGATAATTATTATCCTATTGATTATGCTCTCAGCTTGGCCTCCTTGGCAGTGAATTGTACTGCAGACAAGTCTTTGTCCAGACCAACCATAGCAGAAATTGTACTTAGTCTCTCCCTTCTCACTCAACCATCTTCCTCGACACTGGAGAGATCCTTGACTTCTTCTGGATTAGATATAGAAGCTACTCAAATTGTCACTTCCATAGCAGCTCGTTGA 1794 0.4158 MAALFVSLSLRAQILYVVLMFFTCIAAQSEQTNGTNFSCPSDSPPSCETYVTYITQSPNFLSVTSVSNIFDTSPLKIARASNIENEEDKLIPGQVLLIPVTCGCTGNRYFANISYEINPGDSFYFVSTTSYQNLTNWHVVMDLNPSLSPYTLPVGIQVVIPLFCKCPSKNQLDRGIKYLITHVWQPSDNVSLVSNKFGASPEDILSENNYGQNFTAANNLPVLIPVTRLPDLIQSPSDGRKHRIGLPVIIGISLGCTLLVVVSAILLVYVCFLKMKSLNRSASSPETVDKLLSGVSGYVSKPTMYETGAILEATMNLSEQCKIGESVYKANIDGKVLAIKRFKEDVTEELKILQKVSHGNLVKLMGVSSDNDGNCFVVYEYAENRSLDDWLFAKSCSETSNSRTTLTWCQRIGIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMMSKIDVFAFGVVLIELLTGKKAMTTKDNGEVVMLWKEIWKIFDQEENREERLRKWMDPKLDNYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSSSTLERSLTSSGLDIEATQIVTSIAAR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02892 597 Gene3D Phosphorylase Kinase; domain 1 294 381 - -
Vimu7g02892 597 Gene3D Transferase(Phosphotransferase) domain 1 382 465 - -
Vimu7g02892 597 Gene3D Transferase(Phosphotransferase) domain 1 466 580 - -
Vimu7g02892 597 FunFam Os07g0541700 protein 382 474 - -
Vimu7g02892 597 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Vimu7g02892 597 Pfam LysM domain 63 99 IPR018392 -
Vimu7g02892 597 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 16 571 - -
Vimu7g02892 597 ProSiteProfiles Protein kinase domain profile. 285 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02892 597 Pfam Protein tyrosine and serine/threonine kinase 342 463 IPR001245 GO:0004672|GO:0006468
Vimu7g02892 597 SUPERFAMILY Protein kinase-like (PK-like) 314 563 IPR011009 -
Vimu7g02892 597 ProSiteProfiles LysM domain profile. 51 98 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02892 Vimu-Chr7 24391451 24394346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02892 4 570 Receptor kinase-like Gene Family AT2G33580 29.601 3.93e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu7g02892 PK_Tyr_Ser-Thr 3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02892 - - vra:106777834 1156.35