Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02887 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTGTGATCATATGTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATTTGGGATACCCATCGTAGTTCAATGGATGATTTAACAGATATAGAGAAAGAAGACATTGATCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAGTCTGAAGATGATAGACTCTGTAACATTGACGATGAGGAAGATGAATATCTTGCTAAAATTCATCAAGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAGGATGAACGTCTTGCTAAAATTCAACAAGAGCATGAACGTCTTGCTAAACTTCAACAAGATGAAGATGACCGTGTGGCTAAAATTCAACAAGAACATGAGCGCCTTGCTAAACTTCAACAAGATGAGGATGAACGTCTGGCTAAAATTCAACAAGATGAAGTTGAACATCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTCGGGCAATTCAAGAAAGTTTGACCATTGGTTCTCCTCCTCGATCAGACAATGAATCTTCATTTCTATCTTATCCTCACCTCTTTCCCCCTGGATACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGGTGTTTGGCATCCAGAATGCTTCTGCTGCCACGCATGTCGTCTGCCAATAACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTGCAAAAATACTGCCCATCTCATGAGCTTGATGGCACACCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTCGAAATACAAGAATTTTACGAAGGTCTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAGAATGCAAGTCTTCATGGTCATCATCACTTACCCGAAACCAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACGATTTCAAGGAGGCCGAGGATCGGAGCCGGCTACCGAGTCACGGACATGATAACTGAACCCTTCAAGCTGATCCGTCGCTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGCTTAAAGGTATTCAGCCTTTAACATGGAGCAGGAAGTTTATATATTTTTTTTCTCATGATGCCAAGTTGGACAAAGTTTCTGGTTTTTTGACAGGCTATCCTAACCTCAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTGTTGGCTCATATGTGGTTAGATTCAGAGCTGTATTCAGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAGGAAACTTGGTGAGTTTTTTAAACACCAGATTGAATCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCCGGTAACAAAGCAATGCTCAAGTATGGGCTCAAAAGCACCCTTGATCATATCCATATGACAGGAAGTTTTCCATACTGA 1818 0.4202 MGWFRKLLKGCDHMSRGQYQGKYGEDRIWDTHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDRLCNIDDEEDEYLAKIHQEDEYLAKIQQEDEYLAKIQQEEDERLAKIQQEHERLAKLQQDEDDRVAKIQQEHERLAKLQQDEDERLAKIQQDEVEHLAKAQLEEDEQLARAIQESLTIGSPPRSDNESSFLSYPHLFPPGYRICAGCKTEIGHGRFLSCMGGVWHPECFCCHACRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNASLHGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVTDMITEPFKLIRRCEVTAILVLYGLPRLKGIQPLTWSRKFIYFFSHDAKLDKVSGFLTGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDFERKLGEFFKHQIESDTSSAYGDGFRSGNKAMLKYGLKSTLDHIHMTGSFPY 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02887 605 ProSitePatterns LIM zinc-binding domain signature. 220 254 IPR001781 -
Vimu7g02887 605 Coils Coil 113 133 - -
Vimu7g02887 605 SMART lim_4 219 271 IPR001781 -
Vimu7g02887 605 Pfam LIM domain 220 275 IPR001781 -
Vimu7g02887 605 Gene3D Cysteine Rich Protein 214 278 - -
Vimu7g02887 605 MobiDBLite consensus disorder prediction 526 547 - -
Vimu7g02887 605 PANTHER PROTEIN DA1-RELATED 2 132 463 IPR045218 -
Vimu7g02887 605 CDD LIM_DA1 220 272 - -
Vimu7g02887 605 MobiDBLite consensus disorder prediction 526 552 - -
Vimu7g02887 605 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 179 192 IPR003903 -
Vimu7g02887 605 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 303 - -
Vimu7g02887 605 SMART uim 42 61 IPR003903 -
Vimu7g02887 605 SMART uim 179 198 IPR003903 -
Vimu7g02887 605 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 245 - -
Vimu7g02887 605 FunFam Protein DA1-related 1 214 273 - -
Vimu7g02887 605 ProSiteProfiles LIM domain profile. 218 278 IPR001781 -
Vimu7g02887 605 Pfam Protein DA1 369 600 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02887 Vimu-Chr7 24343609 24348244 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g02887 DA1-like 1.6e-80 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02887 - - vum:124826554 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02887 7 24343609 24348244 Vimu7g02887 7 24343609 24348244 ECH
Vimu7g02887 7 24343609 24348244 Vimu7g02887 7 24343609 24348244 PCT