Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02885 ATGAACATGGTCATTGTGACAGTGGCAAACCTTAAAGCGGTTATGAAGAAAAGAGATAAAGATGATGGTTTTAGCATGGGAATAAGAACACCGTTACATTCATCGAGGAGACTAGTACTGCACACCATTGGTTTTCTTTTCGATCTTGGATTAATTGTTGCAATTCTATGTCCCAAGATTTTCAACCGGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGGACAAAGTAAGGTTGCAAGGAGGGTTCGAGGCAGCGCCATTGGTTGGGATAGAAGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCGGAGATGTTCAATTTTCCGCCTGCGGCTGCGGCGGAATTGATGGAGCAGCAGCCTGTGACGGCCACGTTTAGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAACCACAACACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCACGCCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCAAATTCCCTCCAAGGTTTCACCGGTTCGGCCGTGGGAGGGTCTTTTGGGCAATTCACATGGGTTCCTGAGAGTGCTCATCAGCAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTATCGTTGTCTTCTTCTCTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGACAGTGGTTTTCTATATTACAATCATCAACAAGGGGGTGGTGTGGGAGCTGGTGCTTCTTCTTCTTCTTCAACAGTTCAATTTCCGTACAAGAACAACAGTCATCACCAAGCATTGCATTTGCAAGGGATGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAACACAAAGTATGTGAAGGCTGCACAAGAGTTGCTCGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAACAAGTTGAATAGGCAGAATTCAAACCCTAATTCAAATCCCGATGGAGGTGGTGGTGGTGGTGGTTCTTCGCCTTCGTCAAAAGATGCTGGTATTCCTCCTCCTCCTTTGTCAGCCGGTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGGCATGTATTGTGGACAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTCGGTGCGGCGGTTCCATACACAGCGCTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCACAGCTGAAGCAAAGTTGCGAGCTACTAGGAGAGAAAGAAGGGGCGGGGACCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTTCTTGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCATCAGATGGGGATGATGGAACAAGAAGCTTGGCGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGACTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGAGTACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATATCAGTGGGAACCAAGCACAAACTCCAAGCACACCAGGAGCAGCTACGACGTCAACAGCAACAACAGCTGCACCACCAACAATCACAACAACAAAACCAACAGGGAAAAAATCCGATATCAATGCCACCGAAAGCGACTCATCACTTGTTGCAATGAATAGACAGGGCTTCTCGGAAAACCAAGGAAAGCAGTCCAACACCACCTCCACCACTGTCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCACCACCCGGGTCACAGTGCTTCGACTCAGATCTGCCCCCACAGAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCGCGTCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCACAGTCGGTGACGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCGGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2361 0.4922 MNMVIVTVANLKAVMKKRDKDDGFSMGIRTPLHSSRRLVLHTIGFLFDLGLIVAILCPKIFNRESSASRMGWREEGDKVRLQGGFEAAPLVGIEEEEPVYETAGMLSEMFNFPPAAAAELMEQQPVTATFRAARQAGEWYGNRQQQGVNMMMGGLGDSKNQNGVNNNQHQPQHQISSINADSAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSAVGGSFGQFTWVPESAHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGVGAGASSSSSTVQFPYKNNSHHQALHLQGMIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKNKLNRQNSNPNSNPDGGGGGGGSSPSSKDAGIPPPPLSAGDRIEHQRRKVKLLSMLDEACIVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESTEERENNQSNNSNISGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSDINATESDSSLVAMNRQGFSENQGKQSNTTSTTVMASVSATTSEIAPPGSQCFDSDLPPQRLMATDDTCRLVTADFGTASASADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKTPFSVRDFGAI 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02885 786 MobiDBLite consensus disorder prediction 615 665 - -
Vimu7g02885 786 SUPERFAMILY Homeodomain-like 537 602 IPR009057 -
Vimu7g02885 786 CDD homeodomain 535 596 IPR001356 GO:0003677
Vimu7g02885 786 MobiDBLite consensus disorder prediction 371 390 - -
Vimu7g02885 786 Gene3D - 538 600 - -
Vimu7g02885 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 210 619 - -
Vimu7g02885 786 FunFam BEL1-like homeodomain protein 4 538 600 - -
Vimu7g02885 786 MobiDBLite consensus disorder prediction 604 665 - -
Vimu7g02885 786 MobiDBLite consensus disorder prediction 371 414 - -
Vimu7g02885 786 SMART prehox3 338 483 IPR006563 -
Vimu7g02885 786 Coils Coil 598 621 - -
Vimu7g02885 786 SMART HOX_1 535 599 IPR001356 GO:0003677
Vimu7g02885 786 Pfam Associated with HOX 343 482 IPR006563 -
Vimu7g02885 786 ProSiteProfiles 'Homeobox' domain profile. 532 595 IPR001356 GO:0003677
Vimu7g02885 786 Pfam Homeobox KN domain 552 591 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02885 Vimu-Chr7 24314889 24322834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02885 338 784 Homeobox Transcription Factor Family AT2G23760 54.871 3.22e-150 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu7g02885 POX 7.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02885 - - gmx:100786231 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02885 7 24314889 24322834 Vimu7g02885 7 24314889 24322834 ECH
Vimu7g02885 7 24314889 24322834 Vimu7g02885 7 24314889 24322834 PCT