Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02882 ATGGAAGTGCTTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGTACTCAGCAGAGTTCAGGAACTGCTTTTGTATATCAAGAAGAAACTAATTGTGCAGAAAGTGGTGGGCAAGACAAACTGGTAGCTGGTCGGCTGAATGAATCATCACATAAAATGCAAGGGCCTCAAATAGAAAGGCAAGGTGGTTTGTCAACTAATTCAGATTGCCAATGCATTGGAGCTTCATGTTGTGACTGTCAAGTGGATGATCAAAATGAATATTGTGGTTTCCATGATTTTGAAGAAGACATTATGAATGAACCTTGTTTAACATCTGACAACTCTATCTCTGTTGTTGATACAATTGAAAGTGAATCGCCAAACAACAGTCGGGAAGGAGACTTGTCATGTTCTGAACCCAAGTGGCTTGAGGGGGATGGATCAGTGGCATTGTGGGTCAAGTGGAGGGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCGTTATCAACGTTGAAAGCAAAACCAACACATGAAAGAAAGAAATACTTTGTTATATTCTTTCCGCACACAAGGATTTATTCTTGGGCAGACATGCTGCTCGTTAGATCCATTAACGACTTTCCCCATCCCATTGCATATAAGACTCATCAGGTGGGACTCAAAATGGTTAAAGACTTAACTGTAGCACGGCGGTTTATTATGAGAAAGCTAGTTGTTGGCATGCTGAACATGGTCGACCAGTTTCCTTTTAATGCTTTGACAGAAACTGCTCGTGATATGAAGGTCTGGAAGGAGTTTGCCATGGAGGCTTCTCGTTGTAATGGTTATTCTGATTTTGGGAGAATGCTTCTAAAGCTGCATAGTTTGTTAAGTATACTTGTATGTGTAGATGTTAACACGATACGGCAATCAATACTGTTTTCTGACCCTAGGCATTGTTTTGCTAAAACTAGCATACTGCAGCACCATATAAATGTTGACTGGTTCCGGCATTCTTATACCTCTTGGACTGAAAGATGTCAGAGTGCCAATAGTGCTGACTCAGTGGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGATCAATACTCTCTCTGATGCACCAGTGCAATCAACATTAAGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTATGACACCACCTTCCTTATCGATCAGCAAAGACACACAGCAACAGAGTTATGAGGATTTGTTCCCAGCAAACCTTCAGGTTTGTAGAAAAAGGGCCAAGCTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGCTCAAACTGTTGCTCTTCAGGCTGACCCTGACTTCTTTAAGACTCAGGGCATATTGAGCACATTAGCAGATGAGTCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGGCAGCTGATTCACCTGGTCATTTGGTCGATAAATGGAATGGAATTGTAGTTGAGAATACTGATCCCCATTTTTTGCATACCAAAGAATCAACAACTACAAAGGAAATGACTGTTGCAAAATTTGTAGAATCTGGTAGTAAGAATCGACAATGCATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTGTACTGTTGTGTACATCTATCTTCCAGATTTTTGGGGAGCTCAACGAAAACTGAAAAGCCTGTTCCACTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTCTTTATTCTGTAAGAAACACCGGCCACATGCTGAAACAGAGCAGATCTCAAATATACCACAGAATACACTAAAGAGAAAACATGAAGAAAATTATACCGGTTCAGAGGGCATTCTCTCGAGAGACTTGCTATTAGTCAATGTTGAAAGTCCACTGCAAATGGATCCAGTGTCATCCATTGGTGGTGATTCCGTCTATGGAGAAAACAACTCTAATGAGAAGCGCATGCATTCTGAACATGATCATAATGCAATGGAGTCACTGCAGTGTATAGGTTCCCCTCCCTATGATAAGATGAATCCTTGCAGGGAAGGTCCTAAACGGTATTGCTTGTATTGTGAAAGTCACCTCCCTAGTTGGCTTAAGCGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACGGAACTTTTGAGGGACTGCAACTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTTCTTAAAAGCATTTTGTCATTAAGAAACCCTGTTCCTAAGGATGTCCAATTTCAGTGGGCTCTGACTGAAGCCTCTAAAGATTCTAGTGTAGGAGAGTTTTTTAAAAAGTTAGTTCACAGTGAAAAGGCCAGAATCAAATCATTATGGGGATTCAATGATGACATGGATATATCTTCTGTTATGGAAGAACCTCCTCTCTTGCCATCCACAAACGATGATTACTATGATAAGGAAAATGCCATTAAGTGTAAGCTATGCTCTGCAGAATTTCCTGATGACCAAGAGCTTGGTAACCATTGGATGGACAGTCATAAAAAGGAGGCGCAGTGGCTATTTAGAGGCTATGCATGTGCCATTTGTCTGGATTCATTTACTAACAAGAAACTGTTGGAAACGCATGTTCAGGAGAGGCACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATCCCTTGTGGGAGTCATTTTGGAAATACCGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCAACAAACTTTATCTACTGGTGAAGATTCTCCAGTAAACCGTGATCAGGGTAATTCAGCCCCTTTGGAGAATAATTCTGAGAATACAGGTGGTTTTCGGAAATTTGTTTGCAGGTTTTGCGGGTTGAAATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCTCATATGGGGCCTAATCTGGCCAGCAGTCGCCCTGCAAAGAGAGGAGTTCGATATTATGCTTACAGATTAAAATCTGGCAGACTTAGCCGCCCCAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGAAGCATTCAGGAAACAAATTCACATGGCACAGGGGGAATAACCGGGCAACCTCATGTTACTGAAACAACAAACATTGGTAGATTGGCGGAACATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGCCCAAACCATCTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTGTAGCATCATTGGAGGAGAAATATGGAATTCTTCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATAATATTTTGGTAAGTTGGCATCGGGAGGGTTTTATTTGTCCTAGTGGTTGTAATGTATCAAAGGGTCAAGTTTTGCTCTCTCCTTTAGAGTCTCTTCCTAATAGTTCTGTAATGCCCAAAGCTGGGAATTCATCTGATCCTACAAGTGACGAGTGGGAGGTGGATGAATTTCATTGCATCATCAATTCACGAACTTTAAAGTTAGGTTCACTGCAAAAAGCTGTGGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTGGTAGATCAAGAACTTGTGCATTCTCTTCATATCAATGGCTGTAATGGACAAAATATAAACCCTTCTCGGCCTTGGGAGAGTTTTACCTATGTTACAAAGCCAATGCTCGATCAATCCCTCATTCTTGATTCAGAGAGTCTGCAACTGGGATGTGCCTGTCCATACACCACCTGCTGTCCTGAAACATGTGATCATGTTTACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCCTGGAGGAAGGTTATCTTGTCTATGAGTGTAATCACATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGTGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATATGAAAGAGGCACATGATAGGCGTAGAAGTTATGGCACAGAGCATTGCAGTTATTTCTACGACATCGATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGACAGGCTCAGTATGTAATTGATGCTACTAAATTTGGAAATGTTTCAAGATTCATCAATCATAGTTGCACCCCAAATCTGGTCAATCACCAAGTTCTTATAGAGAGCATGGATTCTGAACGTGCTCATATCGGTTTTTATGCAAATCGGGATATTGCTTTAGGTGAAGAGCTAACATATGACTTTCAGTACGGGCATGTTCTTAGTGAAGGATCTCCTTGCCTTTGCGAATCCTTGAAGTGTAGGGGGCGCCTTTATTAG 4566 0.4133 MEVLCSGVQYAGESDCTQQSSGTAFVYQEETNCAESGGQDKLVAGRLNESSHKMQGPQIERQGGLSTNSDCQCIGASCCDCQVDDQNEYCGFHDFEEDIMNEPCLTSDNSISVVDTIESESPNNSREGDLSCSEPKWLEGDGSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVIFFPHTRIYSWADMLLVRSINDFPHPIAYKTHQVGLKMVKDLTVARRFIMRKLVVGMLNMVDQFPFNALTETARDMKVWKEFAMEASRCNGYSDFGRMLLKLHSLLSILVCVDVNTIRQSILFSDPRHCFAKTSILQHHINVDWFRHSYTSWTERCQSANSADSVELLKEELFDSILWNGINTLSDAPVQSTLSSEWKTWKHDVMKWFMTPPSLSISKDTQQQSYEDLFPANLQVCRKRAKLEVRRADTHASQVEIKAQTVALQADPDFFKTQGILSTLADESCKQEGVREVSMAADSPGHLVDKWNGIVVENTDPHFLHTKESTTTKEMTVAKFVESGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKTEKPVPLDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAETEQISNIPQNTLKRKHEENYTGSEGILSRDLLLVNVESPLQMDPVSSIGGDSVYGENNSNEKRMHSEHDHNAMESLQCIGSPPYDKMNPCREGPKRYCLYCESHLPSWLKRARNGKSRIVSKEVFTELLRDCNSWEQKVHLHKACELFYRLLKSILSLRNPVPKDVQFQWALTEASKDSSVGEFFKKLVHSEKARIKSLWGFNDDMDISSVMEEPPLLPSTNDDYYDKENAIKCKLCSAEFPDDQELGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQQTLSTGEDSPVNRDQGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKANANLKRSIQETNSHGTGGITGQPHVTETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNHLDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHNILVSWHREGFICPSGCNVSKGQVLLSPLESLPNSSVMPKAGNSSDPTSDEWEVDEFHCIINSRTLKLGSLQKAVVLCDDISFGKESIPVICVVDQELVHSLHINGCNGQNINPSRPWESFTYVTKPMLDQSLILDSESLQLGCACPYTTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDMKEAHDRRRSYGTEHCSYFYDIDARVNDMSRLIEGQAQYVIDATKFGNVSRFINHSCTPNLVNHQVLIESMDSERAHIGFYANRDIALGEELTYDFQYGHVLSEGSPCLCESLKCRGRLY 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02882 1521 MobiDBLite consensus disorder prediction 937 965 - -
Vimu7g02882 1521 Gene3D SET domain 1205 1504 IPR046341 -
Vimu7g02882 1521 SMART c2h2final6 871 894 IPR013087 -
Vimu7g02882 1521 SMART c2h2final6 905 928 IPR013087 -
Vimu7g02882 1521 SMART c2h2final6 837 860 IPR013087 -
Vimu7g02882 1521 SMART c2h2final6 974 997 IPR013087 -
Vimu7g02882 1521 ProSiteProfiles Pre-SET domain profile. 1287 1363 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g02882 1521 SMART set_7 1366 1504 IPR001214 GO:0005515
Vimu7g02882 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 976 997 IPR013087 -
Vimu7g02882 1521 Pfam SET domain 1377 1497 IPR001214 GO:0005515
Vimu7g02882 1521 SMART preset_2 1223 1350 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g02882 1521 Pfam Zinc finger C2H2-type, 3 repeats 873 998 IPR040689 -
Vimu7g02882 1521 MobiDBLite consensus disorder prediction 935 965 - -
Vimu7g02882 1521 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 5 288 - -
Vimu7g02882 1521 Gene3D Classic Zinc Finger 824 897 - -
Vimu7g02882 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 871 894 IPR013087 -
Vimu7g02882 1521 ProSiteProfiles SET domain profile. 1366 1498 IPR001214 GO:0005515
Vimu7g02882 1521 ProSiteProfiles Post-SET domain profile. 1505 1521 IPR003616 -
Vimu7g02882 1521 SUPERFAMILY SET domain 1215 1511 IPR046341 -
Vimu7g02882 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 839 860 IPR013087 -
Vimu7g02882 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 907 928 IPR013087 -
Vimu7g02882 1521 Pfam Pre-SET motif 1227 1358 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g02882 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 974 1002 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02882 Vimu-Chr7 24283772 24297764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02882 99 1520 C2H2 Transcription Factor Family AT2G23740 49.966 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g02882 Pre-SET 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02882 - - gmx:100786757 2648.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02882 7 24283772 24297764 Vimu7g02882 7 24283772 24297764 ECH