Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g02840 | ATGGGTCTCTGCACTTCCAAACCCACTCTCTCCGCTACCCAATCCGCCACTCACTCCCCCACTCTACATTCTCAAGATGTCGCCGTCGCAGTCACTCACAGTCACAGCGCCGAACCTCACTTGCGCAGCACCGATGGCGAGAGCGATAACCCTAAGGAGCTCGAGAACGCTAAGAGATCTCCCTTCTTCCCATTCTACAGTCCGAGTCCGGGTCGCTATGTGTTACCCGTCTCGCCGCGCCGCTTCTTCAAGCGATCGTTTCTGTCGCCCTCCCCAGCGAAGCACATAAGGGCGGCGCTGGCGCGGCGGCACGGGTCGGTGAAACCCAACGAGGTCCCCATACCTGAGGCTGAGGGGTTGGCTGGGCTGAACAAGACTTTTGGATTCTCCAAACATTTCGGAAATAAATATGAAGTTGGAGATGAGGTTGGGAGAGGGCATTTTGGATACACTTGTGTTGCTAAGGTGAAGAAAGGAGAGGTGAAGGGACAGCAAGTGGCCGTTAAAGTCATTCCAAAAGCCAAGATGACCACTGCAATTGCTATTGAAGATGTGAGAAGGGAGGTAAAAATTTTGAGAGCTTTGACTAGGCACAAGAATCTCGTACAATTCTATGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGCTGTTAGACAGAATATTGTCAAGAGGTGGGAAGTACACAGAGGAAGATGCAAAAGTTGTCCTTAGACAAATATTGGATGTGGTTGCCTTTTGCCATCTTCAGGGTGTTGTGCACCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGACGAGAACTCAATCCTGAAGACCATAGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTATGTGGCACCCGAAGTTCTACATAGAGCTTACAGTACAGAAGCTGATGTATGGAGTATTGGAGTGATTGCATATATTTTATTATGTGGCAGTCGTCCCTTTTGGGCCCGGACCGAGTCTGGTATCTTCCATGCTGTGGTAAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAACAAATTTTGTTATGCGACTACTAAATAAAGATCCACGAAAAAGAATGTCTGCAGCACAGGCATTATGTCATCCATGGATTAAAAACAAGGATGTGAAAGTACCTCTGGATATTCTAATATTCAAGCTCATGAAGGCGTACATGCGTTCCTCATCTCTACGGAAAGCGGCTTTAAGGGCTTTGTCCAAGACATTAACTGTGGATGAGCTATTTTATTTGAGGGAGCAGTTTTCACTTTTTAATCCAAGCAAAAATGGCTCTATTAGCTTGGAAAATATCACAGCGGTCTTGATGATGAATGCAACAGATGCTATGAACGAGTCACGCGTACCTGACTTTCTGATATCACTTAATGCATTACAATTTAGAAGGATGGATTTTGATGAGTTCTGTGCCGCTGCCCTTAGTGTTCATCAACTTGAAACACATGACCAGTGGGAGCAACGCGCACGTTATGCTTACGAACTTTTTGAAAAGGACGGAAACAAGGCCATACTCATTGACGAACTAGCTTCGGTGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTCCATGATTGGATTCGGCACACTGATGGAAAATTAAGTTTCATTGGGTTTGTCAAATTGTTGCATGGCCCATCTAGAAGTCTTGCAAAAGCTCAATAG | 1770 | 0.4559 | MGLCTSKPTLSATQSATHSPTLHSQDVAVAVTHSHSAEPHLRSTDGESDNPKELENAKRSPFFPFYSPSPGRYVLPVSPRRFFKRSFLSPSPAKHIRAALARRHGSVKPNEVPIPEAEGLAGLNKTFGFSKHFGNKYEVGDEVGRGHFGYTCVAKVKKGEVKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTRHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKVVLRQILDVVAFCHLQGVVHRDLKPENFLFTSKDENSILKTIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFHAVVKADPSFDEPPWPSLSDEATNFVMRLLNKDPRKRMSAAQALCHPWIKNKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTVDELFYLREQFSLFNPSKNGSISLENITAVLMMNATDAMNESRVPDFLISLNALQFRRMDFDEFCAAALSVHQLETHDQWEQRARYAYELFEKDGNKAILIDELASVLGLGPSVPVHAVLHDWIRHTDGKLSFIGFVKLLHGPSRSLAKAQ | 589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g02840 | 589 | FunFam | CDPK-related kinase 1 | 434 | 507 | - | - | |
| Vimu7g02840 | 589 | Gene3D | - | 423 | 577 | - | - | |
| Vimu7g02840 | 589 | SUPERFAMILY | Protein kinase-like (PK-like) | 134 | 442 | IPR011009 | - | |
| Vimu7g02840 | 589 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
| Vimu7g02840 | 589 | CDD | STKc_CAMK | 136 | 398 | - | - | |
| Vimu7g02840 | 589 | Gene3D | - | 418 | 507 | - | - | |
| Vimu7g02840 | 589 | Gene3D | Transferase(Phosphotransferase) domain 1 | 226 | 417 | - | - | |
| Vimu7g02840 | 589 | FunFam | CDPK-related kinase 3 | 129 | 301 | - | - | |
| Vimu7g02840 | 589 | SUPERFAMILY | EF-hand | 426 | 580 | IPR011992 | - | |
| Vimu7g02840 | 589 | FunFam | CDPK-related kinase 1 | 130 | 225 | - | - | |
| Vimu7g02840 | 589 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 123 | 564 | - | - | |
| Vimu7g02840 | 589 | ProSiteProfiles | Protein kinase domain profile. | 137 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vimu7g02840 | 589 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vimu7g02840 | 589 | ProSitePatterns | Protein kinases ATP-binding region signature. | 143 | 169 | IPR017441 | GO:0005524 | |
| Vimu7g02840 | 589 | Pfam | Protein kinase domain | 137 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vimu7g02840 | 589 | MobiDBLite | consensus disorder prediction | 33 | 61 | - | - | |
| Vimu7g02840 | 589 | Gene3D | Phosphorylase Kinase; domain 1 | 130 | 225 | - | - | |
| Vimu7g02840 | 589 | SMART | serkin_6 | 137 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vimu7g02840 | 589 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 261 | 273 | IPR008271 | GO:0004672|GO:0006468 | |
| Vimu7g02840 | 589 | FunFam | Calcium-dependent protein kinase SK5 | 309 | 404 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu7g02840 | Vimu-Chr7 | 23998515 | 24003482 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu7g02840 | 1 | 589 | EF-hand Containing Proteins | AT3G50530 | 69.267 | 0.0 | 877 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CDPK | Vimu7g02840 | Pkinase | 1.6e-70 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g02840 | K13412 | - | gmx:100794177 | 1007.28 |