Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02825 ATGTCGCAACGATCTGTGCCAGCACCGTTTTTGACCAAGACGTACGAGTTGGTGGATGATCCAGAAACGAACGAGGTGATATCGTGGAGTGACACTGGGAACACATTTGTTGTGTGGAAACATGCGGAATTTTCCAAGGATTTGCTTCCTAAATGTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATCGTGCCAGATAAATGGGAATTCGCAAACGAACATTTCAAGCGAGGGCACAAGGAGCTTCTCTGCGACATCAAACGCCGCAAGACCGTGCCGCAATTGCCTGCGCTTCCACCGGAGGCCGGAAAATCCAGCGGGGGTGGTAACTCTCCGTTAAACTCCGGCGGTGGAGATGACGCCGGGTCCACCTCTACCTCCTCCTCCTCCTCCGGTTCGAAGAACACGGGGTTGGTGGAAACAAACACAACAGCTTCCCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGAGCGAGGAAGCAGTGCGATGAGCTCGTTGCTTATCTGAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGGGGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACACTAGCAGACAAAAGAAACAACAACCACAAGAGAGCGCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAAGAGTCCAAGCCCGTTGTTGACTTTGAACCTATAAATCTCATCATGACTAGCAATAAGGTTTGCAACTGA 855 0.5064 MSQRSVPAPFLTKTYELVDDPETNEVISWSDTGNTFVVWKHAEFSKDLLPKCFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGHKELLCDIKRRKTVPQLPALPPEAGKSSGGGNSPLNSGGGDDAGSTSTSSSSSGSKNTGLVETNTTASHELSSENQKLKKDNETLSCELARARKQCDELVAYLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGGECLKLFGVWLKEDTLADKRNNNHKRAREDQMGFGGPRLKESKPVVDFEPINLIMTSNKVCN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02825 284 MobiDBLite consensus disorder prediction 117 160 - -
Vimu7g02825 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02825 284 Gene3D - 2 101 IPR036388 -
Vimu7g02825 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02825 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02825 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Vimu7g02825 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 194 IPR027725 -
Vimu7g02825 284 Coils Coil 156 183 - -
Vimu7g02825 284 FunFam Heat stress transcription factor B-4 2 100 - -
Vimu7g02825 284 MobiDBLite consensus disorder prediction 103 168 - -
Vimu7g02825 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02825 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02825 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02825 Vimu-Chr7 23842367 23843906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02825 2 284 HSF AT4G36990 50.671 1.88e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu7g02825 HSF_DNA-bind 2.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02825 K09419 - gmx:100791543 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02825 7 23842367 23843906 Vimu7g02825 7 23842367 23843906 ECH
Vimu7g02825 7 23842367 23843906 Vimu7g02825 7 23842367 23843906 PCT