Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02820 AGTGGTGGACAGGGATATTTCCCTCTGCAGCGTTCCGTTCTCTTTCATTGTGATTTCTGGAAGTTTTTGATGGAGCAGCGAAAACTTGTGGTTAGTCGTGCTCATTCAATTTTCATATATGTTCCTCTACTCGTTTTGGGAATTCCGTGGGATGTTGATACTGAAGGATTAAGGGAATATATGAGCAAATTTGGGGAGCTGGAAGATTGCATTGTAATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACACTGGAAGTCAAAGTGGCTACACCAAAGGAGGAAATGAGGGCACCGGTCAAAAAGGTTACTAGAATATTTGTAGCCAGGATCCCACAATCGGTAACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGCTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCAGTGGTGGTTGATCGAGCAACACCTAAGGCAAGAGTTTTTATTTTCTATAGCCTGTCATTTTACTGTAGAATAGTTTCGGGAAATTGCAGAGATGAAGACTTTAAGCCAGTTGGCAGCAGAATGCCACCACAGGGAGGATATGGTGCATACAATGCTTACATTTCTGCAGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCAGGCCCAATTTATGGACGGGGAGAACCTGCTCGTAGAACTAGTAAAAAGATTTTTGTTGGCCGTCTACCCCCAGAAGCATCTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGCCACAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGTCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCGGCTACACCCGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGACGATTGGGGCTATGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1245 0.4353 SGGQGYFPLQRSVLFHCDFWKFLMEQRKLVVSRAHSIFIYVPLLVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKARVFIFYSLSFYCRIVSGNCRDEDFKPVGSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02820 414 Gene3D - 279 364 IPR012677 -
Vimu7g02820 414 SUPERFAMILY RNA-binding domain, RBD 43 122 IPR035979 GO:0003676
Vimu7g02820 414 FunFam heterogeneous nuclear ribonucleoprotein 1 121 211 - -
Vimu7g02820 414 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 280 388 - -
Vimu7g02820 414 SUPERFAMILY RNA-binding domain, RBD 126 209 IPR035979 GO:0003676
Vimu7g02820 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 205 IPR000504 GO:0003723
Vimu7g02820 414 Gene3D - 42 121 IPR012677 -
Vimu7g02820 414 FunFam heterogeneous nuclear ribonucleoprotein 1 41 120 - -
Vimu7g02820 414 FunFam RNA-binding family protein isoform 1 281 364 - -
Vimu7g02820 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Vimu7g02820 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 340 IPR000504 GO:0003723
Vimu7g02820 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 189 IPR000504 GO:0003723
Vimu7g02820 414 SMART rrm1_1 42 113 IPR000504 GO:0003723
Vimu7g02820 414 SMART rrm1_1 285 356 IPR000504 GO:0003723
Vimu7g02820 414 SMART rrm1_1 130 201 IPR000504 GO:0003723
Vimu7g02820 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 360 IPR000504 GO:0003723
Vimu7g02820 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Vimu7g02820 414 SUPERFAMILY RNA-binding domain, RBD 280 383 IPR035979 GO:0003676
Vimu7g02820 414 Gene3D - 122 209 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02820 Vimu-Chr7 23783901 23787463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02820 54 333 Eukaryotic Initiation Factors Gene Family AT2G36660 24.224 5.25e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02820 K14411 - gmx:100795240 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02820 7 23783901 23787463 Vimu7g02820 7 23783901 23787463 ECH