Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02816 CTGCATCACTTTCTGCAATCTCTGCACTCTTTTTATATTATTCTCTATCTCTCTTCTGCAAAGTGCAAACCCTACTTACTTTCAAACCTCCTTCTTCTCTCCCTTCCCATACTCTGCTCCCAACTTTTCTCCCTTCTTCCCTTTCTTCCATTCCTCCGTGTCTCTCGCAGTTTCAAACTCATGGACGTGGACATACTCAAAACTTCCACGAGTGATACCAGCATGGACATGATCATGATGATGCAAATGGAAAAGTTCCCGGAGTTATGTGAACCTTTTTATAACAGCACCACTCCTCTCTACCCAGAAAACGACTTCTTAAACTCCACCACCACCACCACTCTACCTGTCTTCTCCAACGTTAACCCAAACGTTATAACTCCACCACCCACTTTGATCAATCCACCGCCACCACCTTCCTCTAATTTTGTTCTCCAACAACCCATGACACCTCCTCTTCAACCCAACCCTTCCTTCTCGGAGAAGAAGAATTCCGTGGCTGCCATGAGGGAGATGATTTTCCGCGTAGCGGTGATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCTCCCAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCAGCCAGGCACAGAAGGGAAAGGATCAGCGAGCGAATAAGGATCCTTCAGAGATTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGACGAAGCCATCCACTACGTAAAGTTCTTGAAG 747 0.4659 MHHFLQSLHSFYIILYLSSAKCKPYLLSNLLLLSLPILCSQLFSLLPFLPFLRVSRSFKLMDVDILKTSTSDTSMDMIMMMQMEKFPELCEPFYNSTTPLYPENDFLNSTTTTTLPVFSNVNPNVITPPPTLINPPPPPSSNFVLQQPMTPPLQPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02816 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Vimu7g02816 249 SMART finulus 205 249 IPR011598 GO:0046983
Vimu7g02816 249 MobiDBLite consensus disorder prediction 186 211 - -
Vimu7g02816 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 249 IPR036638 GO:0046983
Vimu7g02816 249 MobiDBLite consensus disorder prediction 187 211 - -
Vimu7g02816 249 Gene3D - 196 249 IPR036638 GO:0046983
Vimu7g02816 249 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 122 249 IPR045843 GO:0003700|GO:0006355
Vimu7g02816 249 Pfam Helix-loop-helix DNA-binding domain 209 248 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02816 Vimu-Chr7 23727857 23728605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02816 83 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 57.143 2.53e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g02816 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02816 - - gmx:100796649 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02816 7 23727857 23728605 Vimu7g02816 7 23727857 23728605 ECH