Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02814 ATGAACTGGGTTCGCGGAGAATCACTCGGCAGTGGAACCTTCGCCACCGTCAACATCGTCGTCCCTGCAAACGGCTCCACTCGGTTCCCTTCTCCCGTCGCCGTCAAATCCTCTGATTCCGACAACGCGGGTTCGCTCCAACACGAAAAGGAGATACTCGATCGCCTTGGCTCTTCCCCTTACATCATCAAGTGTTTCGGCCACGATCACACCGTCGAGAACGGCGAGGAGTTCTACAACGTATTCCTCGAACGCGCCACCGAAGGGTCCCTCGCCGACCAGGTCAAGAAACACGGCGGAAGCCTCCCGGAGCCTTTCGTTCGGCGATGCACGAGGTCTATCGTGGAAGGGCTCAAACATATTCACGAGCGCGGTTTCGTTCACTGCGACGTGAAGCTTCAGAACGTTCTCGTTTTCGACGGCGAGGTGAAAATCGCGGACTTCGGGCTCGCCAAGGGGAAGGGGGAGAAACAAGGGAAATGCGAGTTCAGGGGAACGCCGTTGTTTATGTCGCCGGAATCAGTGAACGACAATGAATATGAGCCGCCGGCGGATATTTGGGCCCTGGGATGCGCCGTCGTGGAGATGGTGACCGGAAAACCCGCGTGGGATGTTAGCAATGGTTCCAGTATTTGGAAATTGTTGATTCGGATTGGAGTGGGAGAAGAATTGCCAAAGATTCCAGAAGAATTGTCGGAAGAGGGGAAGGACTTTTTGGAGAAGTGCTTTGTTAAGGATCCCAAGAACAGATGGAGCGCTGAGATGCTTCTGAAGCACCCTTTCATCAAAGTTGACTCATTTTCGTTCGAGAAAGTTCATCAACCGTTACCGTCGCCGTCGCCGAGGACCCACTTCGATTTTCCTGACTGGGCTTCCACCACAATGGCTTCGGTCCCGTCCTCCCTGGATTCCGATGAGCACTCTGGGTGGTCGAGTTCTCCGGAGAGTCGTCTCCAGCCGCTTGTCACCGATAAGACACCGGAGAATTGGTCAGAATCGGATGGCTGGATCAGGGTTAGGTGA 1023 0.5464 MNWVRGESLGSGTFATVNIVVPANGSTRFPSPVAVKSSDSDNAGSLQHEKEILDRLGSSPYIIKCFGHDHTVENGEEFYNVFLERATEGSLADQVKKHGGSLPEPFVRRCTRSIVEGLKHIHERGFVHCDVKLQNVLVFDGEVKIADFGLAKGKGEKQGKCEFRGTPLFMSPESVNDNEYEPPADIWALGCAVVEMVTGKPAWDVSNGSSIWKLLIRIGVGEELPKIPEELSEEGKDFLEKCFVKDPKNRWSAEMLLKHPFIKVDSFSFEKVHQPLPSPSPRTHFDFPDWASTTMASVPSSLDSDEHSGWSSSPESRLQPLVTDKTPENWSESDGWIRVR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02814 340 CDD STKc_MAPKKK 2 262 - -
Vimu7g02814 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 310 - -
Vimu7g02814 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Vimu7g02814 340 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02814 340 Gene3D Transferase(Phosphotransferase) domain 1 93 285 - -
Vimu7g02814 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vimu7g02814 340 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02814 340 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
Vimu7g02814 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vimu7g02814 340 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Vimu7g02814 340 MobiDBLite consensus disorder prediction 298 340 - -
Vimu7g02814 340 MobiDBLite consensus disorder prediction 298 330 - -
Vimu7g02814 340 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02814 Vimu-Chr7 23708121 23709873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02814 1 340 MAP Kinase Kinase Kinase AT3G50310 53.258 1.46e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu7g02814 Pkinase 1.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02814 - - gmx:100782937 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02814 7 23708121 23709873 Vimu7g02814 7 23708121 23709873 ECH
Vimu7g02814 7 23708121 23709873 Vimu7g02814 7 23708121 23709873 PCT