Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02812 ATGGCGGACAAGGAGCCAGTAAGCGGAAGGCGAAGGCCCAGGGGACCGGAGTCCACCGCTCGCAGCGAAGCGTTGGAGCGTCTCAAGGCTCGTCTCCGCGGTGGTCGTGGATCTGATGGCACTGGGCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACCGTCCCTGAGGACGAGTACAATGCCCTCGTTGCAAAGCGTCGTGAACAGGCGCGCTCCTTCATAGTCGACGACGAAGGAATCGGATACGGCGACGAGGGCGAGGAAGAGGACTGGTCTCAGGCTGGATTCACTCTCTCCTCCGATGAATCCGAAGACGAATCGAAGAGGCCGAAGCGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGGCCTTCTTCATCGCTCTCCGCCGCTGCGGCCATGATGGGAGGGCAGAAGTTGGCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGTAGAGACGATAAAGTCTGCGAGAGCATCGTCGACGATGTTATCGCGGAGTTCGCTGCGGACGAGACTGATAGACTGAGGCGTAGAAGGGCGCAAGGGAATTCCTTTTCCATTTCTGACGCAAACAATGTTTTGCGTGTTAATACCGCGTTTAGGGATAAGCCTTCTGTTGGTATGATGCAAGATTCTTCTTCATTGCCCGAACATGGTAACCCTGAGTCTGTTAAGGTATTTGTTGAGAGCGATGGTTTTGACTCGGGGTTTGAGCCAAAGAGCGCGGTGGTTAGCGAAGTCCAAGATTTCGGACGTGGTAGTTCTGAGAACGGGCAGACACCTACGGTGGTAGCCGATGATTCTCAAGTTAATGAATGTATGGCTGAGGCGAAAGAAGTGAAGAGTTTTGAAATTGCAGTGAAAGCGGATGCAAAAAAGGAGGTGTTCACTTTGAACGCGAAGGTTAGAGAAGCGGACGACCCTGCATTGTCTGCTACTGCTGGTTGGAAGGAAACAATACGCGGTGCTGGTGGGGTTGACGTTGCTGATTCGAAGGATCCTTTAGAGTTTGATCTGGAGGAAGATGGATCACTGCCTTTCTACATCTTAGATGCTTATGAGGAGTTTTATGGGGAAAACAGGGGCACCATTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAATTCCTAGCCGACCCTTGCTTCGCACTGAAGAGATGACGAGTCTCGAGAGAGATCTCCAGGAGTCTCGAATTTCTTCTGCGGATTTCTTTAAAAAGTTGCAAGATGCAGTAGCTGATGCTAAGAATGAGATAGCACAACATCTGGTGAATTTGGATGTTTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCAATTTGAAGTTCCTACAGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGACCCTGTACTTCCAGCAGATCTCAAAGGCGAAAGTTTCTGTGCTCTCTTAGGAACTAGTTGCAGTGCCCTTGAGCTTTTTCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACAAGTTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAGCACATAAAGACATCAGTTTCTTCAAAAATCACTTATAATATTCCTCCAGTGGTTGTTGTAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTCTCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGAGGAGACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCAATGGGATTCAACAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAAAGAGCATTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTTTCCACAGATTCCAGGCGTGTAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGATCGACTATGCCAAAACTTGGAAGAAGAAGTAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCATGCATTGCTGGGAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTAATGTTTTATTTAAGTATTCTTCCACTCACCCGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATCTTTTGCTGCATACTTTCCATGCAGTGAAATATATGGTGCCAGACAAGTTCACAAACTATTCCAAAGAAACGAAATTGACGAAACGTAGAGTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCCGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTGCTTCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCACGTCTACCATCAAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTAGATAGGAGGAAAAGGGTAAAGTCGTTGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTAATCCTATAAGGGTTCAGCAACTGGATATTCAGCAGCAAGCACTTAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTTATCTCTAGTACTCTTCATCTTGAAGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCCCCGGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGCTGCTCTGTTGGTGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAATGATGAGGAGAGGTATAGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTCGACTGCCCACCCGTCTCTAAATCTATTTGCTGCTTGTTGGGAAGCGGAATGACAACCAGCGAATCCACCGAGGAATCTGATTTCAATTTCTGGCGTAAGATGTGTTGTCCTAAATGCCCCGAAGATGTCAAAATTTCTCCTGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGACATGTTTGTTTTGATGTACTATAAAGGTTTACTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGACGGAGGCCAAATCTAGAATAACTATAGAGAAAGAGTTGATAAAACTTAGGCCGATGATTGATCCGGCAGCTTCAACAGCGCAGAAGATCAGGGACCGTTGTGCCTTTGGTTGGGTGAGACTGGAGGATCTCGTCATAACAGTTTAA 4647 0.4386 MADKEPVSGRRRPRGPESTARSEALERLKARLRGGRGSDGTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEDESKRPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQKLASMFTSSVFKKSRDDKVCESIVDDVIAEFAADETDRLRRRRAQGNSFSISDANNVLRVNTAFRDKPSVGMMQDSSSLPEHGNPESVKVFVESDGFDSGFEPKSAVVSEVQDFGRGSSENGQTPTVVADDSQVNECMAEAKEVKSFEIAVKADAKKEVFTLNAKVREADDPALSATAGWKETIRGAGGVDVADSKDPLEFDLEEDGSLPFYILDAYEEFYGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAIPSRPLLRTEEMTSLERDLQESRISSADFFKKLQDAVADAKNEIAQHLVNLDVSNFSMAPVKRKYAFDQFEVPTGENYVVKINYSFKDPVLPADLKGESFCALLGTSCSALELFLIKRKIKGPSWLQVSKFATSSSSRRVSWCKFEVTVDSPKHIKTSVSSKITYNIPPVVVVAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNILCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLFHRFQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAVKYMVPDKFTNYSKETKLTKRRVTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKRVKSLIKNEKKKNEKANPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNALNLEVISSTLHLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFNDDSSSLLLSAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKSICCLLGSGMTTSESTEESDFNFWRKMCCPKCPEDVKISPAMIANQVKRQADMFVLMYYKGLLTCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKTEAKSRITIEKELIKLRPMIDPAASTAQKIRDRCAFGWVRLEDLVITV 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02812 1548 FunFam DNA polymerase 1145 1331 - -
Vimu7g02812 1548 CDD POLBc_alpha 898 1317 IPR045846 GO:0003887|GO:1902975
Vimu7g02812 1548 SUPERFAMILY Ribonuclease H-like 452 845 IPR012337 -
Vimu7g02812 1548 PRINTS DNA-directed DNA-polymerase family B signature 1005 1017 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu7g02812 1548 PRINTS DNA-directed DNA-polymerase family B signature 922 935 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu7g02812 1548 PRINTS DNA-directed DNA-polymerase family B signature 1067 1075 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu7g02812 1548 NCBIfam DNA polymerase (pol2) 51 1299 - -
Vimu7g02812 1548 FunFam DNA polymerase 564 878 - -
Vimu7g02812 1548 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Vimu7g02812 1548 MobiDBLite consensus disorder prediction 1 34 - -
Vimu7g02812 1548 Pfam DNA polymerase family B 823 1301 IPR006134 GO:0000166|GO:0003677
Vimu7g02812 1548 Coils Coil 1081 1115 - -
Vimu7g02812 1548 Coils Coil 426 446 - -
Vimu7g02812 1548 Gene3D Helix hairpin bin 968 1018 - -
Vimu7g02812 1548 ProSitePatterns DNA polymerase family B signature. 1069 1077 IPR017964 GO:0000166|GO:0003676
Vimu7g02812 1548 Gene3D - 1145 1332 IPR042087 -
Vimu7g02812 1548 FunFam DNA polymerase 1340 1534 - -
Vimu7g02812 1548 Pfam DNA polymerase family B, exonuclease domain 381 757 IPR006133 -
Vimu7g02812 1548 Coils Coil 969 989 - -
Vimu7g02812 1548 Gene3D Palm domain of DNA polymerase 891 1130 IPR023211 -
Vimu7g02812 1548 MobiDBLite consensus disorder prediction 880 905 - -
Vimu7g02812 1548 MobiDBLite consensus disorder prediction 102 124 - -
Vimu7g02812 1548 CDD DNA_polB_alpha_exo 564 815 - -
Vimu7g02812 1548 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1546 - -
Vimu7g02812 1548 SUPERFAMILY DNA/RNA polymerases 896 1317 IPR043502 -
Vimu7g02812 1548 Pfam DNA Polymerase alpha zinc finger 1340 1544 IPR015088 GO:0003887|GO:0006260
Vimu7g02812 1548 Gene3D - 351 550 - -
Vimu7g02812 1548 MobiDBLite consensus disorder prediction 1 56 - -
Vimu7g02812 1548 FunFam DNA polymerase 963 1019 - -
Vimu7g02812 1548 Gene3D DNA Polymerase alpha, zinc finger 1340 1533 IPR038256 -
Vimu7g02812 1548 Gene3D - 391 517 - -
Vimu7g02812 1548 SMART polmehr3 564 1081 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu7g02812 1548 Gene3D - 564 880 IPR036397 GO:0003676
Vimu7g02812 1548 MobiDBLite consensus disorder prediction 74 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02812 Vimu-Chr7 23677754 23689831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02812 2 1546 Core DNA Replication Machinery Family AT5G67100 59.707 0.0 1807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02812 K02320 - gmx:100798779 2514.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02812 7 23677754 23689831 Vimu7g02812 7 23677754 23689831 ECH