Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02810 ATGAAAGCAATGCCCGATCAGTCGAGCGGCGGCGCAATGAACGACCAGCTCTCCAACCCCACCTCCATATTTGGTCTCCGTCTCTGGGTGGTGCTCGGCGTGTGTGTCGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGGTGGCCTTCAAGCGCTCCAAAGCCAACCCCGTTTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATAAGGGTCGACCACGCCCCCGCCCCCAACCCGACCCACCAACCCGACCCTTTTCCCGAACCTGACCCAGTTCCGCCCACCGAGGAAGAAACCACCCCTCTCGGCTACCACAGAATCCAGTTCGAGATTGGGAAGAACCACCGAATCTCCTACCCCGAACGTGCCTTGCTTCGCTCATCTTCCAACGACCCCGCCAGTGCTGAGCCTCGCCTCCTCGATCAGGTTCCCACCGTCATTCCCGAAGTTTCTCACTTGGGCTGGGGCCACTGGTACACTCTCCGGGAGCTTGAGGATTCCACCAACGCCTTCGCCCCTGAGAATGTTATTGGCGAAGGAGGTTATGGAATTGTTTACCACGGTATCTTGAACGACAATACTCATGTTGCCATCAAGAACTTGCTCAATAACAGGGGGCAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCTATAGGACGGGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTTTATGAGTATGTCGACAATGGTAACTTGGAGCAGTGGCTACATGGGGATGTTGGGCCTTACAGTCCTCTAACATGGGAAATTCGGATGAACATTATTCTGGGAACGGCTAAAGGGCTAACTTATTTACATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTCAGTAAGCAGTGGAATGCAAAGGTCTCAGACTTTGGCCTCGCCAAACTCCTTGGTTCTGACAACAGTTATATCACCACCCGTGTCATGGGTACTTTTGGATATGTTGCTCCTGAATATGCAAGTACCGGCATGTTGAATGAGCGAAGTGATGTTTATAGTTTTGGAATTCTGATTATGGAAGTTCTTACAGGAAGGAACCCTGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTGGTAGACTGGCTCAAGAAGATGGTCAGCAACAGGAACCCAGAGGGGGTGCTGGATCCCAAGCTTCCCGAGAAACCAACTTCAAGGGCATTAAAACGAGCCCTTCTTGTAGCCTTACGTTGCACTGATCCTAATGCACAGAAGCGACCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCTAGAAAGGATGCAGTACATTCACCCAATGAGAGAGTAGGGGATGGGCTGAAAGAGGAGGCAGATGTATCAGTTGATGATGCCAAGCTTGAGACAAGAACGAACCCTCAAATAGAAAAGCAATAA 1500 0.5033 MKAMPDQSSGGAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWVAFKRSKANPVSIPDVSKEIQEIRVDHAPAPNPTHQPDPFPEPDPVPPTEEETTPLGYHRIQFEIGKNHRISYPERALLRSSSNDPASAEPRLLDQVPTVIPEVSHLGWGHWYTLRELEDSTNAFAPENVIGEGGYGIVYHGILNDNTHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPYSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVLTGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARKDAVHSPNERVGDGLKEEADVSVDDAKLETRTNPQIEKQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02810 499 CDD STKc_IRAK 181 447 - -
Vimu7g02810 499 FunFam Probable serine/threonine-protein kinase At1g01540 155 250 - -
Vimu7g02810 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Vimu7g02810 499 Gene3D Phosphorylase Kinase; domain 1 155 250 - -
Vimu7g02810 499 Pfam Protein kinase domain 178 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02810 499 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Vimu7g02810 499 ProSiteProfiles Protein kinase domain profile. 175 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02810 499 PANTHER OS01G0323000 PROTEIN 10 463 - -
Vimu7g02810 499 SMART serkin_6 175 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02810 499 SUPERFAMILY Protein kinase-like (PK-like) 151 447 IPR011009 -
Vimu7g02810 499 MobiDBLite consensus disorder prediction 78 103 - -
Vimu7g02810 499 MobiDBLite consensus disorder prediction 447 499 - -
Vimu7g02810 499 FunFam Putative receptor-like serine/threonine-protein kinase 251 461 - -
Vimu7g02810 499 Gene3D Transferase(Phosphotransferase) domain 1 251 465 - -
Vimu7g02810 499 MobiDBLite consensus disorder prediction 82 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02810 Vimu-Chr7 23667234 23669420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02810 126 447 Receptor kinase-like Gene Family AT4G02010 44.985 4.14e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu7g02810 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02810 - - gmx:100797726 874.774