Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02809 ATGCCCTTCTTCCTTTTCCTTTTCCTTTTCCTTTTCCACAAGTTTCTGAAAGTGGTTGGTTGCATTACCATTTACTACTTTCTTTCTCAACACACGGAAACAAAATCAACAAAACCACCCCAACTCAATCCATCTCTGCATTCTTCTTCTTTTCTGCTCACACACACACCTGTAGGAATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCATCACCCCACTCCCTCCCCGGATCCTGCAACTCCAACGTCTCTCACCAAAACGTCAATTCTCACGCTTCTTTCACGCCCTCGCATCTCCAACACGGCAAGATCTCAAACTTTGGTTCCACCGCCTCTTTTGTCTCGCCTTCTGGCACTTGCGGTTCCTTCAAGGCCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTATAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTGGCCGAGGAGCTTCCAACAAAGCCTGTTCCTTCAAGGAGTTCATCTAAGAGATCAAGGGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACGGACAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTACAGCCACTGCAGTTGTCTCAGATGGGCATGGAACTGAGTGAAAGAAACAGGTCTACCCCTTTAAACATGACAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACATCTAATCTACCTAGCAAACACATTCTGCCAAATCAACCATCTGCACCATATCCTTCATTTATTAACAACCCAGAAACTTCTTTTGGACTGGAATCCCGAATCCAACCAGAAACAAAACCTCTCCAACACAAAGGAGGATCTTCTGGGCCAATACGCGGGGAAGACATTTTGCATTACCAGCAACCAAGTGCTATCCATTCAGATGCTAATACATTAGGTGGTTCTCAAGTTGTGAAAGAATTCGAGTCAGGCACAACAGTATCACTCTCTTTTGACACGCAAACATGTGAACCATGCATTGGCGGAAGAGAACAGTCAGGAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCGCAGTTAAGTAGGTAA 1314 0.4467 MPFFLFLFLFLFHKFLKVVGCITIYYFLSQHTETKSTKPPQLNPSLHSSSFLLTHTPVGMGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSPHSLPGSCNSNVSHQNVNSHASFTPSHLQHGKISNFGSTASFVSPSGTCGSFKAQTASAANVSSSSVIVSENENDDYDCESEEGVEALAEELPTKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMELSERNRSTPLNMTATLPLHQENPLHYTSNLPSKHILPNQPSAPYPSFINNPETSFGLESRIQPETKPLQHKGGSSGPIRGEDILHYQQPSAIHSDANTLGGSQVVKEFESGTTVSLSFDTQTCEPCIGGREQSGVIIRNSEANIVVTSQLSR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02809 437 Pfam Helix-loop-helix DNA-binding domain 205 251 IPR011598 GO:0046983
Vimu7g02809 437 CDD bHLH_AtPIF_like 202 264 IPR047265 -
Vimu7g02809 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 262 IPR036638 GO:0046983
Vimu7g02809 437 SMART finulus 207 256 IPR011598 GO:0046983
Vimu7g02809 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Vimu7g02809 437 FunFam Basic helix-loop-helix transcription factor 196 259 - -
Vimu7g02809 437 MobiDBLite consensus disorder prediction 157 213 - -
Vimu7g02809 437 Coils Coil 240 260 - -
Vimu7g02809 437 Gene3D - 196 260 IPR036638 GO:0046983
Vimu7g02809 437 MobiDBLite consensus disorder prediction 199 213 - -
Vimu7g02809 437 MobiDBLite consensus disorder prediction 167 181 - -
Vimu7g02809 437 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 68 360 IPR031066 -
Vimu7g02809 437 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02809 Vimu-Chr7 23658402 23661295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02809 64 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.498 6.32e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g02809 HLH 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02809 - - vum:124831111 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02809 7 23658402 23661295 Vimu7g02809 7 23658402 23661295 ECH
Vimu7g02809 7 23658402 23661295 Vimu7g02809 7 23658402 23661295 PCT