Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02807 TTGTTTACCTTCACCAAATATTCCCATAGCCAGATATCAATCATGACTATCACCAACGAAGAGCAGCAACAAAATCAATTACCTGGCCACAAAGAACTCAGTCACAAGAGTCTCCTTCAGAGCGATGCACTCTATCAGTATATACTTGAGACCAGTGTGTATCCAAGAGAGCACGAGAGCTTGAAGGAGCTACGCGAGTTGACGGAAAAACACCCTTGGAACCTCTTAGCTATACCACCTGACGAAGGACAACTTCTAAGCATGTTAGTGAAGGTGATCAATGCGAAGAACGCCATGGAGATTGGCGTCTACACTGGTTACTCCCTGCTTTCCACTGCCCTCGCTCTTCCATCTGATGGAAAGATCCTGGCAATGGATATTAGCAGGGAATATTATGAACTGGGGTTGCCTGTGATTGAAAAGGCAGGAGTGGCTCACAAGATTGACTTCAGAGAAGGCCCAGCACTTCCTCTTCTTGATCAACTCATCAAAGACGAGAAGAACAAGGGAAGCTTCGATTTCATCTTCGTCGATGCTGATAAGGATAACTACTTGAACTATCACACTAGGGTGATTGAGCTTGTGAAGATTGGGGGAGTGATCGCCTACGATAACACCCTGTGGAACGGCTCTGTGGCCGCGCCACCCGATGCTCCTCTCTTGGATTATGTCAAGTATTATCGCGATTTTGTTATAGAGCTGAATCAAACACTTTCGCTTGATTCAAGGGTCGAGATTTGCCAGCTTCCCGTTGGTGACGGCATTACACTGTGCCGCCGCATCATCTGA 789 0.4677 MFTFTKYSHSQISIMTITNEEQQQNQLPGHKELSHKSLLQSDALYQYILETSVYPREHESLKELRELTEKHPWNLLAIPPDEGQLLSMLVKVINAKNAMEIGVYTGYSLLSTALALPSDGKILAMDISREYYELGLPVIEKAGVAHKIDFREGPALPLLDQLIKDEKNKGSFDFIFVDADKDNYLNYHTRVIELVKIGGVIAYDNTLWNGSVAAPPDAPLLDYVKYYRDFVIELNQTLSLDSRVEICQLPVGDGITLCRRII 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02807 262 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 37 261 IPR002935 GO:0008171
Vimu7g02807 262 Pfam O-methyltransferase 50 261 IPR002935 GO:0008171
Vimu7g02807 262 FunFam Caffeoyl-CoA O-methyltransferase 1 30 262 - -
Vimu7g02807 262 CDD AdoMet_MTases 100 203 - -
Vimu7g02807 262 PANTHER O-METHYLTRANSFERASE-RELATED 33 261 - -
Vimu7g02807 262 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 260 IPR029063 -
Vimu7g02807 262 Gene3D Vaccinia Virus protein VP39 36 262 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02807 Vimu-Chr7 23633696 23634846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02807 20 261 Monolignol Biosynthesis Gene Families AT4G34050 75.620 7.08e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02807 K00588 - gmx:100799303 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02807 7 23633696 23634846 Vimu7g02807 7 23633696 23634846 ECH
Vimu7g02807 7 23633696 23634846 Vimu7g02807 7 23633696 23634846 PCT