Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02801 ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTTGATGATGATAAAGGCAGGAGAGTGGAATATGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGAAGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACCTTGGAGAGAAAAAGCAGTAAAATATTCGGCTTTTCAGTTACACATAATGACAGTGACCACCCACCCGTCACCCAGCAGTTTTTCTCGGTGGAGGATTCTGACCTTCCTGTCTCTGAAGCAGCCGCCGTGGGCGGCGGAAACTCCTTTCCTCAAGCTCACTGGGTAGGTGTAAAATTCCGGCAATCGGAAACTCTTGACCCCGGAAAATCAGTGAAAATGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGAGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGAGTATAGCCTGTGTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGAACAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGTCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCGGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCTCCTGCCACCTGCATCTAATTGGCGGAATGGAGGAACAAAGCCTAAGCTTGTAAATATACTACCAAAACCATGTAGGAGCAACATGGAAGCCTATGCAAGAGATTGGCTCGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATATGGTCCGTATAGGTCACCAGCTGAGCCACAACTGTCTCACAGTTTTGCACGTCTTCACCCACCAAATTTTCATGTGGGTACCCCTTCAACAATTATTATCCTGGTTTTGGCTCATGCGTTCAATTTTAATGACAGAAGATGGTATTGGGTTCCCAGCAGCAGCAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCATCCACATTTTTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCCTAAGTTGGTAG 1557 0.4631 MWDLNDSPDQRKDYESEGCSSFDDDKGRRVEYVSNSSSSAVVLEDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVEDSDLPVSEAAAVGGGNSFPQAHWVGVKFRQSETLDPGKSVKMSEPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGEYSLCGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSDSSGVAADHNLDLSLGNLSSRRGNGQISGNHFPNSASDQLLPPASNWRNGGTKPKLVNILPKPCRSNMEAYARDWLGESETLRLLNQTHLQSPTTKEMHRYGPYRSPAEPQLSHSFARLHPPNFHVGTPSTIIILVLAHAFNFNDRRWYWVPSSSSSSNGGRIGSDLSLSMSDQQQWQAGHPHFLATAAASSGFPPQIRPSLSW 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02801 518 FunFam AP2-like ethylene-responsive transcription factor 148 213 - -
Vimu7g02801 518 MobiDBLite consensus disorder prediction 124 149 - -
Vimu7g02801 518 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Vimu7g02801 518 Gene3D AP2/ERF domain 148 213 IPR036955 GO:0003700|GO:0006355
Vimu7g02801 518 SUPERFAMILY DNA-binding domain 148 212 IPR016177 GO:0003677
Vimu7g02801 518 SUPERFAMILY DNA-binding domain 246 306 IPR016177 GO:0003677
Vimu7g02801 518 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 MobiDBLite consensus disorder prediction 1 31 - -
Vimu7g02801 518 FunFam AP2-like ethylene-responsive transcription factor 246 306 - -
Vimu7g02801 518 Pfam AP2 domain 149 203 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 Pfam AP2 domain 246 295 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 394 - -
Vimu7g02801 518 ProSiteProfiles AP2/ERF domain profile. 149 211 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 MobiDBLite consensus disorder prediction 1 60 - -
Vimu7g02801 518 Coils Coil 205 225 - -
Vimu7g02801 518 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Vimu7g02801 518 SMART rav1_2 149 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02801 Vimu-Chr7 23577897 23580557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02801 1 340 AP2-EREBP Transcription Factor Family AT4G36920 65.363 9.41e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu7g02801 AP2 1.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02801 K09284 - gmx:100786333 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02801 7 23577897 23580557 Vimu7g02801 7 23577897 23580557 ECH
Vimu7g02801 7 23577897 23580557 Vimu7g02801 7 23577897 23580557 PCT