Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02799 ATGGACCCTCAAGGAGGAGAGAGAGAACCCACAAGGAAGCGAAGCGGCGTGGCGGTGGCGGTCGAGGGAGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAGATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCCTATTCCACCCCTGTCGCCGCCGCACGTGCTTACGACACAGCCGTCTTTTACCTCAGGGGACCCTCCGCGCGGCTCAACTTCCCCGACCTTCTTGTTGGAGAGGGCGCTGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATTAGGAAGAAGGCCACCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCGCTGCACCACCACCACGTGGCGCCGCCCCCGCCGGAGCTTCTCTCGCGCGACGGAGGTGGGTCCGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCGAATGGGATGTGAATTGA 498 0.6044 MDPQGGEREPTRKRSGVAVAVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAALVAGCDMSAASIRKKATEVGARVDALQASLHHHHVAPPPPELLSRDGGGSGDFAVDLNKMPEPESEDCEWDVN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02799 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 159 - -
Vimu7g02799 165 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Vimu7g02799 165 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Vimu7g02799 165 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vimu7g02799 165 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Vimu7g02799 165 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Vimu7g02799 165 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vimu7g02799 165 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vimu7g02799 165 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vimu7g02799 165 MobiDBLite consensus disorder prediction 126 165 - -
Vimu7g02799 165 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02799 Vimu-Chr7 23559811 23561055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02799 14 159 AP2-EREBP Transcription Factor Family AT3G50260 62.838 3.68e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g02799 AP2 1.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02799 7 23559811 23561055 Vimu7g02799 7 23559811 23561055 ECH
Vimu7g02799 7 23559811 23561055 Vimu7g02799 7 23559811 23561055 PCT