Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02797 ATGGACGACATGGCTGCCTACTACTCACAGCCCCAACCGGCGGGCCTTCTCACTTACCACCAGTACTATCAACCGCCTCCTCCGCCACCTCCTCCGCTGTTGGCGGTGGTACCACCGCCACCCGGCGCGGTTGTCCCGCCGGCGCACCACGGGCATCCGCCATACGTGGCTCAGCATCAGCAGCAAGCGGTGTTCGGTTCTTACGGCGCTCCTCAACCCTCCTCGAACGAGGTTCGCACCCTCTTCGTCGCTGGCCTTCCAGAAGATGTAAAGCCCCGCGAAATCTACAATCTTTTCCGCGAATTTCCTGGCTACGAGTCTTCACATCTACGGAGTCCCACCAATTCGTCTCAGCCTTTTGCTTTTGCTGTGTTCGCCAGTCAGCAGTCAGCAATCATGGCAATGCATGCTTTGAATGGCATGGTGTTTGATCTTGAAAAGGGCTCCACTCTTTTTATTGATCTGGCAAAATCAAACTCTAGATCCAAACGCACTAGGATAGATGATGAGAGAATCGGTGCCGATAAGAAAGCTAGAAGTCTTACATCATCATGGGTCACTCCCGATTCTGGTGTTAGCAGCATTCACATGCCTGGAATGGGTAATCCTGCTTTCAACACGAACACGTTTGGTTATCCATCTGCACAAAGTCTTGGAAGTGCTGATGGTAGTGCTGTGAATGATGGTCGATACCTGAATATGAAGAAGTCTTCATCTCCTTACATTCCTCAAAACTCAACCCCGTGTGCAACTTTATTTGTAGCAAATCTGGGGCCATCTTGTAATGAACAAGAGCTAATGCAAGTGTTTTCTAGATACCATGGATTTTTGAAGCTGAAGATGCAGAGCACATACGGGGCGCCAGTAGCATTTGTTGATTTCCAGGATGCCACTAGCTCAACTGAAGCTCTGAACAGTTTGCAAGGCACAATTCTTCACTCTTCGCAAACTGGCGAGGGAATGCGTTTAGAGTATCCTTTGGTCACCTGCGCTCTTGTTCTCATTCAATTCTGTTTTTTTTTTTGTGTGATTTCGGTTGTGATATGCAAAATCGCGGATGGGCATGCGAAAGAAGCCAAAGTGACTTACATGCTGGAAAACTAG 1104 0.49 MDDMAAYYSQPQPAGLLTYHQYYQPPPPPPPPLLAVVPPPPGAVVPPAHHGHPPYVAQHQQQAVFGSYGAPQPSSNEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTNSSQPFAFAVFASQQSAIMAMHALNGMVFDLEKGSTLFIDLAKSNSRSKRTRIDDERIGADKKARSLTSSWVTPDSGVSSIHMPGMGNPAFNTNTFGYPSAQSLGSADGSAVNDGRYLNMKKSSSPYIPQNSTPCATLFVANLGPSCNEQELMQVFSRYHGFLKLKMQSTYGAPVAFVDFQDATSSTEALNSLQGTILHSSQTGEGMRLEYPLVTCALVLIQFCFFFCVISVVICKIADGHAKEAKVTYMLEN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02797 367 SMART rrm1_1 80 154 IPR000504 GO:0003723
Vimu7g02797 367 SMART rrm1_1 251 324 IPR000504 GO:0003723
Vimu7g02797 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 158 IPR000504 GO:0003723
Vimu7g02797 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Vimu7g02797 367 FunFam RNA-binding protein with multiple splicing 242 331 - -
Vimu7g02797 367 FunFam RNA-binding protein with multiple splicing 2 76 166 - -
Vimu7g02797 367 Gene3D - 75 168 IPR012677 -
Vimu7g02797 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 315 IPR000504 GO:0003723
Vimu7g02797 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Vimu7g02797 367 SUPERFAMILY RNA-binding domain, RBD 78 314 IPR035979 GO:0003676
Vimu7g02797 367 Gene3D - 242 326 IPR012677 -
Vimu7g02797 367 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 226 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02797 Vimu-Chr7 23522810 23526573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02797 80 314 Eukaryotic Initiation Factors Gene Family AT4G34110 21.612 2.52e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02797 - - gmx:100780983 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02797 7 23522810 23526573 Vimu7g02797 7 23522810 23526573 ECH