Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02792 ATGCCTGTGGAGCTCATGATGGGTTATAGGAACGACAGTTTTGCCGAAGAGAATGCGGTTCGAGAAGCCGCGTCAGGGCTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACACGCTCAGCTGCAACAACACCAACACCAACAACTTCAACAACAATCGCACGCCACCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCCGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGAACCAGAACCGGTCACGCGCGTTTCAGAAGAGCCCCTGTGCCTCCACCACCACCTCCTTCCGAACCTAGATTCTACCGCGCAACCCCGCTGCAGCAGATCCCGCCGCCCCCCGAACACCCTTTCATCCCAAAAAATGCTCCGATTGAGACAAAGGACTCTTCCAAGACCATCAACTTCTCTTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACCAAACAGCCCTCTTCCTCGTCGCCTGCGGCCGCAACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTATTTCTTCGTCTTCGTTGAAGAGGAAGTGCAGCTCTGATAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCCAGCCGATGCCATTGCTCAAAGAAGAGCAGAAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCCGCAATAAGTTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGGAAATACGGACAGAAACCGATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCATGTAGAGAGGGCTCTGGATGACCCTTCTATGTTGGTAGTAACCTATGAAGGTGAACACAATCACACACTCTCTGCAGTCGAAGCTACCACTAATCTTATCCTAGAATCTTCTTAG 969 0.5139 MPVELMMGYRNDSFAEENAVREAASGLESVEKLIRLLSHAQLQQHQHQQLQQQSHATNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPPSEPRFYRATPLQQIPPPPEHPFIPKNAPIETKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAATPFQITNLSQVSSAGKPPISSSSLKRKCSSDNLGSAKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02792 322 MobiDBLite consensus disorder prediction 184 220 - -
Vimu7g02792 322 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02792 322 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02792 322 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02792 322 MobiDBLite consensus disorder prediction 184 221 - -
Vimu7g02792 322 SUPERFAMILY WRKY DNA-binding domain 245 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g02792 322 Gene3D WRKY domain 234 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g02792 322 Pfam Plant zinc cluster domain 200 246 IPR018872 -
Vimu7g02792 322 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 314 IPR044810 GO:0003700
Vimu7g02792 322 FunFam WRKY transcription factor 65 232 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02792 Vimu-Chr7 23487180 23489417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02792 1 312 WRKY Transcription Factor Family AT2G24570 44.575 6.17e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g02792 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02792 - - gmx:100804089 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02792 7 23487180 23489417 Vimu7g02792 7 23487180 23489417 ECH
Vimu7g02792 7 23487180 23489417 Vimu7g01403 7 13425704 13427091 PCT
Vimu7g02792 7 23487180 23489417 Vimu7g02792 7 23487180 23489417 PCT