Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02787 ATGGAACCAGCTTCTGCTTATTCTTCATCTCAACCTACTCCTCCAGTTTCTAGTGCTGAAGAACAACACTCAACCAAAGTGACAGGACAGATCAACAATGCACGTGATTCACCATCAACTTTACCTGCTTCTGGCATGTCATTATGGACAAAGCATCTGAAATTTCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCGCAGACCGATAACACAGGCATATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCAGTCAAAAGAAACTGCTGCTCCAGTCAATTCGGGACCTGATCAATCTAATTTAATTGAATCCTTCGCCAAAGGGTTGATGGACTCTTCCAAGAGTGCAGTAAAAGCTGTCCAGGTCAAAGCACGCCATATCGTCTCTCAGAATAAACGTAGATACCAGGAACATGCACTTGACAACAAGTGCATCCAATTTTCCTTGCCTCATGTGAGCATAGGCAACACAACTAAAGATTCTCAAGTGATCAAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATATTAGCTCTGGAATTGTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAAATTTTTTGAAACACGTCATAAGGGTAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGTCCCCCTATTCAACTTATAGCATCATTCTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTTGTCTTCTTTTGTCTCTTAAGGCAAGTCATGATAATCAACTCCAAAGACTTTGGAATTTTAGTAGTGCTCTTCTATCTGAATTTTTCAATCTTTTGACTGTCAATATTATTTTGCAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCCAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCTTGCTAAGAGGGTTCCGGATTCACAAGTGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAGTTTTGTTTGCCACAAGAAACCATCCCAAAACAAAAGATCTATTGCCAGAAGATTTCTGGATCAGTGCACCGAAGAAAGGAATTGTGGTTTTTGCTCTACCAGGAGAACCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAAATTCATTTTAATGATAGACAAGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAATAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGGAAGATCCCCGCTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGGCACCCTACCTTCAAGGACAAAAGCAAATCCCGTCAGCAAAGGATCTGACCGAAACACAGTCAATGCCCTACCTGGTCCAAAGTCTATTACATCTAATTCAACTGAGAGTAAACTCCCAAGAAATGAAGATGATGTATTCTCAGACAGTGATGAAGAGGAGGGCCGAGATACACAAAGCAAGAAAGCTGCAACTGAGTATAAATTTATGGCACCTCATCAAGCTTCTGAGGAGACAACAGACCATGTAGGGATGTTGACACACTCAACTGATCGGTTGTCACTAAAGCATGAGGCAGGCATGCAGAACAATACTTCTGAACAATCAACTGCAGATGAACATCATAAAATTCATACAGGCAATAGCAGCACAAACGTGGAATCTGTAGGGGCAAATGACATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCCTTTGGGGATGAAGACTTTGAAAGTGATTGA 2004 0.4092 MEPASAYSSSQPTPPVSSAEEQHSTKVTGQINNARDSPSTLPASGMSLWTKHLKFPGLGLGQAQQDSQTDNTGISAFARLTGGLGLRTQSKETAAPVNSGPDQSNLIESFAKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEHALDNKCIQFSLPHVSIGNTTKDSQVIKEDGFDLDMTYITENIIAMGFPGGDISSGIVGYIEGFYRNHMEEVIKFFETRHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLSLKASHDNQLQRLWNFSSALLSEFFNLLTVNIILQFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCLLRGFRIHKCPYWVRPSITISDHKGVLFATRNHPKTKDLLPEDFWISAPKKGIVVFALPGEPGLAELVGDFKIHFNDRQGDFYCWMNTTMTENRIILDGSDFDGFDKRKIPAPGFRVEVVMIDYNGTLPSRTKANPVSKGSDRNTVNALPGPKSITSNSTESKLPRNEDDVFSDSDEEEGRDTQSKKAATEYKFMAPHQASEETTDHVGMLTHSTDRLSLKHEAGMQNNTSEQSTADEHHKIHTGNSSTNVESVGANDIKAIAADASVFSFGDEDFESD 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02787 667 ProSitePatterns Tyrosine specific protein phosphatases active site. 283 293 IPR016130 GO:0016311|GO:0016791
Vimu7g02787 667 Pfam Protein-tyrosine phosphatase 253 313 IPR000242 GO:0004725|GO:0006470
Vimu7g02787 667 MobiDBLite consensus disorder prediction 516 575 - -
Vimu7g02787 667 ProSiteProfiles Phosphatase tensin-type domain profile. 167 378 IPR029023 -
Vimu7g02787 667 MobiDBLite consensus disorder prediction 516 550 - -
Vimu7g02787 667 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 180 302 IPR029021 -
Vimu7g02787 667 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 116 630 - -
Vimu7g02787 667 Gene3D Protein tyrosine phosphatase superfamily 158 381 IPR029021 -
Vimu7g02787 667 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 281 314 IPR000387 GO:0016311|GO:0016791
Vimu7g02787 667 SMART PTEN_C2_2 383 511 IPR014020 -
Vimu7g02787 667 MobiDBLite consensus disorder prediction 1 45 - -
Vimu7g02787 667 CDD PTP_PTEN 177 373 IPR045101 GO:0016791
Vimu7g02787 667 ProSiteProfiles C2 tensin-type domain profile. 385 512 IPR014020 -
Vimu7g02787 667 MobiDBLite consensus disorder prediction 615 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02787 Vimu-Chr7 23436753 23451978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02787 36 667 Protein tyrosine phosphatase (PTP) family AT3G19420 55.624 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02787 K01110 - gmx:100801622 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02787 7 23436753 23451978 Vimu7g02787 7 23436753 23451978 ECH
Vimu7g02787 7 23436753 23451978 Vimu3g03433 3 47392623 47399283 PCT