Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02765 ATGTTGGAGCTATGCCTGAGGCCACTGGAGATGTGTTTTGGTGGTGGAGGTAGCGACCAAAGCCTTCTCTGGGACACTGACCTTAAGCCACACGCTTCAGGGAACTACTCAATTGCAGTAGTACAAGCCAACTCCTCCTTGGAAGACCAAGCACAAGTCTTCACCTCTCCCTCCGCAACCTTTGTTGGCGTCTACGACGGCCACGGTGGACCCCAAGCTTCCCGTTTCATCACCAATCATCTCTTCTCCTTCCTCCTCAAATTTACAGAAGAGGAAGGTGGGTTGTCGGAGGAGGTGATAAAGAAGGCGTTCGCAGCGACAGAGGAGGAGTTTTTGCGTTTTGTGAAACAAACATGGATTGCGCGGCCACAGATGGCTTCAGTGGGTTCGTGCTGTATTCTGGGAGCGATTTCAAAGGACGTTCTTTATGTTGCTAATCTGGGGGATTCAAGGGCGGTTCTGGGTCGGAGAGCCTTGGAAGGAGAGGTGAATTGCGGTGGTGTGGTGGCGGAGCGTTTGTCCACCGATCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTGGAAGCTCTTCACCCCGATGACGCACACATTGTGGTCTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTATCAAGATCAATCGGAGATGCTTACTTAAAGAAAGCAAATTTTGACGCAAACCCTTTGTTCCAACAATTTGCATGTCCATTGTACTTGAAGAGACCTGTAATGACAGCCGAACCATCAATACTGATGCGGAAATTGAAGGCAAATGATCTGTTTATAGTGTTTGCATCAGATGGACTTTGGGAGCATTTAACTGATGAAGAGGTTGTTCAAATTGTCTCCGGAAATCCCAGAACAGGAATAGCAAAACGAGTGGTGACAGTTGCACTAGAAGAGGCAGCAAAGAAGAGAGATATGAGGTACGATGACTTAAAGAAAGTTGAGAAAGGTCAAAGGCGTCATTTTCATGATGATATTACAGTGATCGTTCTATATCTCGATCATTCGAAAGAATCTATAAATGGTAGGTCAAGATTTAAAGGAGATTATGGCTGCATTAATACTCCCATTGATATCTTCTCTCAAAGTGCAAACGAAATTGATCTTTAA 1128 0.461 MLELCLRPLEMCFGGGGSDQSLLWDTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFVGVYDGHGGPQASRFITNHLFSFLLKFTEEEGGLSEEVIKKAFAATEEEFLRFVKQTWIARPQMASVGSCCILGAISKDVLYVANLGDSRAVLGRRALEGEVNCGGVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCTRGVWRIKGIIQVSRSIGDAYLKKANFDANPLFQQFACPLYLKRPVMTAEPSILMRKLKANDLFIVFASDGLWEHLTDEEVVQIVSGNPRTGIAKRVVTVALEEAAKKRDMRYDDLKKVEKGQRRHFHDDITVIVLYLDHSKESINGRSRFKGDYGCINTPIDIFSQSANEIDL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02765 375 Gene3D - 25 347 IPR036457 -
Vimu7g02765 375 PANTHER PROTEIN PHOSPHATASE 36 337 IPR015655 GO:0004722|GO:0006470
Vimu7g02765 375 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Vimu7g02765 375 CDD PP2Cc 42 339 IPR001932 -
Vimu7g02765 375 FunFam Probable protein phosphatase 2C 42 26 347 - -
Vimu7g02765 375 SUPERFAMILY PP2C-like 40 341 IPR036457 -
Vimu7g02765 375 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Vimu7g02765 375 SMART PP2C_4 28 337 IPR001932 -
Vimu7g02765 375 Pfam Protein phosphatase 2C 57 307 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02765 Vimu-Chr7 23248219 23250691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02765 17 345 PP2C-type Phosphatase Gene Family AT3G51370 52.226 1.74e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02765 - K01102 gmx:100802394 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02765 7 23248219 23250691 Vimu7g02765 7 23248219 23250691 ECH
Vimu7g02765 7 23248219 23250691 Vimu3g03373 3 47032936 47035382 PCT