Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02755 ATGTCCAAGGCGCGCGTCTACGCCGATGTCAATGCTCTTCGTCCCAAAGAGTATTGGGACTACGAGTCCCTCACCCTTCAGTGGGGAGGGAAATATAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAAAAGAATATTTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCCAAAACTCCTAGTTTGATATTTGAGTATGTCAACAGCACGGATTTTAAAGTTCTGTACCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCCTCGATTACTGCCACTCTCAAGGCGTTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCACGAGTTACGAAAACTTCGTTTGATTGATTGGGGCCTTGCTGAATTTTATCATCCTGGAAAGGACTATAACGTTCGTGTAGCTTCAAGATACTTCAAGGGTCCTGAACTTCTAGTTGATCTGCAAGAATATGACTACTCATTAGACATGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCAGGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTTAATAAGTATCATCTGGAACTCGATCCTCAACTTGATGCGCTTGTTGGAAGGCACAGTCGAAAGCCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAAGGAAGCGATGGCACATCCATATTTCTCTCAGGTAAGAGCAGCAGAAAGTAGCAGAATGAGGACATAG 933 0.4169 MSKARVYADVNALRPKEYWDYESLTLQWGGKYSEVFEGINVNSNERCIIKILKPVKKKKNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGVMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKDYNVRVASRYFKGPELLVDLQEYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02755 310 CDD STKc_CK2_alpha 15 297 IPR045216 GO:0004674|GO:0006468
Vimu7g02755 310 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 306 IPR045216 GO:0004674|GO:0006468
Vimu7g02755 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vimu7g02755 310 Gene3D Transferase(Phosphotransferase) domain 1 89 297 - -
Vimu7g02755 310 Pfam Protein kinase domain 30 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02755 310 FunFam Casein kinase II subunit alpha 9 88 - -
Vimu7g02755 310 ProSiteProfiles Protein kinase domain profile. 21 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02755 310 Gene3D Phosphorylase Kinase; domain 1 30 88 - -
Vimu7g02755 310 FunFam Casein kinase II subunit alpha 89 300 - -
Vimu7g02755 310 SUPERFAMILY Protein kinase-like (PK-like) 20 301 IPR011009 -
Vimu7g02755 310 SMART serkin_6 21 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02755 Vimu-Chr7 23193602 23198437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02755 65 297 Core Cell Cycle Gene Families AT1G20930 30.864 1.95e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vimu7g02755 Pkinase 2.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02755 K03097 - gmx:100810748 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02755 7 23193602 23198437 Vimu7g02755 7 23193602 23198437 ECH
Vimu7g02755 7 23193602 23198437 Vimu7g02755 7 23193602 23198437 PCT