Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02747 GGAGGCATGAGTTGCAACGGGTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACTCCCGAAGCCCAAGGTCATGCCACTGTCTTTGTTGCCAAATTCTTCGGTCGTGCTGACCTCATGTCTTTCATTTCCAACGTCCCTGAAGCCCAAAGACCCGCTCTGTTTCAGTCTCTGCTGTTTGAAGCTTGCGGACGAACGGTGAATCCCGTCAACGGTGCTGTTGGCCTTTTATGGACTGGAAACTGGCACGTGTGCCAGGCTGCGGTTGAGACGGTGCTGCGTGGCGGTACTCTCAGGCCGGTGCCGGAGCTTCTTGGCCTTCACGCTCCCACTCCCGACGACGCCTCCGAAGGCGAAGTTACCTGTAACGACAAATGGAGGGTCCGAGATCCGAACCCGAGTTTCCGGTTGCCTGGTTCGATGTCCGATAAGGCTGCTTCCGGAGGTAAACGCAAACGATTGGAAGAGCTTGCAAAGCTGCAGACGGCCACCACTGATCTAAATCTCCGTTTGACACCGAGTTTCCTGCAGAACGCGGCGAGCTTCGGTTGCCGACAGGAAATTCGATGGCCGAGATCGCCATCGATCAACTCGGAGGAGTCCGGGACCACTACGGCGGCGTGCTTGGAAAGCGGGATCGGAGATCACTACGCTCCCGACGGAGGCCGGAAAGTGTTAAACCTGTTCATTTGA 726 0.5689 GGMSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLGLHAPTPDDASEGEVTCNDKWRVRDPNPSFRLPGSMSDKAASGGKRKRLEELAKLQTATTDLNLRLTPSFLQNAASFGCRQEIRWPRSPSINSEESGTTTAACLESGIGDHYAPDGGRKVLNLFI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02747 241 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vimu7g02747 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 211 - -
Vimu7g02747 241 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02747 Vimu-Chr7 23143839 23144651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02747 3 240 AS2 family AT3G49940 55.000 1.26e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu7g02747 LOB 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02747 - - gmx:100802764 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02747 7 23143839 23144651 Vimu7g02747 7 23143839 23144651 ECH
Vimu7g02747 7 23143839 23144651 Vimu3g03356 3 46945286 46946486 PCT
Vimu7g02747 7 23143839 23144651 Vimu7g02747 7 23143839 23144651 PCT