Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02725 ATGGGTGCTCCTAAGCAAAAGTGGACCGCGGAGGAAGAAGCAGCATTGAAAGCTGGAGTTGTTAAACATGGGGCTGGAAAATGGCGCACTATACTTACCGACCCAGATTTCAGTTCCATTCTGCGCATGCGTTCTAATGTTGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCAAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACTACCATCCCCAAAAATTGACAATAATCACATGGCCTTGAGTACTGCAGTTCAACGTGACAGAGGAGGAGCGGATCCCAAGCCTCTGGCAGTTTCTGGTGGAGTATCTCCTAATTCAAAGGAAAAAGTATCAAGGCTACAGAACTTCCAGTTGGATAATATTATATTAGAGTCTATTATCAAGTTGAAGGAGCCGAAGGGTTCTGACAGGGCAGCAATTGCTTCATATATAGAGGATCAATACTGTTCTACACCAACCCTCAGAAAGTTACTGTCAACAAAACTTAAGCACATGGTGGCAAGTGGAAAATTGATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACTATATCTGAGAAAAGAAGATGTTCTTCCTTGTTACTCCTGGAAGGAAGACCCAAAGATTCTCCAAAAACTGAGAAGACTGGTGTCAACATTCTTTCAAAATCCGAAATTGATGCAGAGCTATCTAAAATGAAGGGTGTGACACCACAAGAAGCAGCAGCTGCTGCAGCAAAAGCAGTTGCTGAGGCGGAAGCTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGACGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATAAAGGCTCTAAAATGCAAGACGCTTCACATTTGGTAA 900 0.4422 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPDFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDNNHMALSTAVQRDRGGADPKPLAVSGGVSPNSKEKVSRLQNFQLDNIILESIIKLKEPKGSDRAAIASYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKTEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAIKALKCKTLHIW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02725 299 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vimu7g02725 299 SMART sant 4 59 IPR001005 -
Vimu7g02725 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vimu7g02725 299 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Vimu7g02725 299 CDD SANT_TRF 6 57 - -
Vimu7g02725 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vimu7g02725 299 Coils Coil 246 280 - -
Vimu7g02725 299 FunFam Telomere repeat-binding factor 1 2 58 - -
Vimu7g02725 299 Gene3D - 2 59 - -
Vimu7g02725 299 SUPERFAMILY "Winged helix" DNA-binding domain 124 200 IPR036390 -
Vimu7g02725 299 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu7g02725 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu7g02725 299 Gene3D - 123 221 IPR036388 -
Vimu7g02725 299 MobiDBLite consensus disorder prediction 94 114 - -
Vimu7g02725 299 Pfam linker histone H1 and H5 family 128 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu7g02725 299 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02725 Vimu-Chr7 22952261 22955913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02725 1 299 Single Myb Histone (SMH) Gene Family AT5G67580 53.974 1.07e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g02725 Linker_histone 9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02725 K09422 - gmx:778165 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02725 7 22952261 22955913 Vimu7g02725 7 22952261 22955913 PCT