Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02704 ATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCACCATGGTACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGCGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGATTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTACGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAGGCTAAAGAAGAAGCTTCTTGGCAAACAAAGAAAGGAACAGCAGATTCAAGCTCGCCGTGTCAGCAACAATCAGCAGAAGCAAGATGTGAAAAGAGAAACCGAGAATTTGATAGCAGCTTCTGAAGTCATCAATCAAGTCCCCTATTGGTCTGCAGAATATTCATCTCTGCCTCTCCCAGTGACTGATGTTTCCTTTCAAAACTACAGTCTGAACAATCAAACTTCTCTCAGGAACTTGATGGTTAATAAACTAGAGGGAATTAGATTTTCCAACGATCATCATCATCAGCAGCAGCAGCAACAGCCATACACCAATGCATGTGAAATGCCCTCCCTGCCAAACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTTGTGAGTGATGAAAACAATAGCGTCACTTATCAGCCATCAAATATATTTCAAGGGTTTGAAAACTTCCCGAGTGATTTTTGCGAACTGGTGTGCGTGAACTCGCAACAGATGGATCGGTCAATGGAGGGTTTTAACTACGGAAAGGAATCCATGGACGTCATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACTAGTTGGGGTGACATGAACTCTTTGGTTTACTCAACTTTGGTTTCTGACTACGAAGGTAGCCGACAGGGAAATCCTCGAGATGTTGTTGTTTTCGAAGAGTGTAACTACTTTGGAATGCAGATGCAATAA 1047 0.4374 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQIQARRVSNNQQKQDVKRETENLIAASEVINQVPYWSAEYSSLPLPVTDVSFQNYSLNNQTSLRNLMVNKLEGIRFSNDHHHQQQQQQPYTNACEMPSLPNQVFPTMVNHVAVVSDENNSVTYQPSNIFQGFENFPSDFCELVCVNSQQMDRSMEGFNYGKESMDVMSNGGSTNTTSTESTSWGDMNSLVYSTLVSDYEGSRQGNPRDVVVFEECNYFGMQMQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02704 348 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu7g02704 348 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vimu7g02704 348 CDD SANT 71 113 IPR001005 -
Vimu7g02704 348 FunFam Transcription factor RAX3 70 147 - -
Vimu7g02704 348 Gene3D - 70 146 - -
Vimu7g02704 348 PANTHER OS09G0431300 PROTEIN 1 298 - -
Vimu7g02704 348 SMART sant 13 64 IPR001005 -
Vimu7g02704 348 SMART sant 67 115 IPR001005 -
Vimu7g02704 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu7g02704 348 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vimu7g02704 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vimu7g02704 348 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu7g02704 348 CDD SANT 16 62 IPR001005 -
Vimu7g02704 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu7g02704 348 Gene3D - 7 68 - -
Vimu7g02704 348 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02704 Vimu-Chr7 22777658 22779245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02704 1 317 MYB Transcription Factor Family AT3G49690 48.358 5.66e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g02704 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02704 K09422 - gmx:106795158 585.874