Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02702 ATGGGTTTTGATCACGAAGCCAGTACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCACCACTCCATCTACCAAGCCTCATCAAGATCATCATCATCATCATTTTTGTGTTGTTAAGCCTTCGCCAACCAAGCCTAATTCTCCCAATGGACCATCTTTGACGTTGGGTTTGTCTGGCGATACCTGCCACCTAGCCAAGCAAGTGCCCAACAACAGTAAGGTTTATTGTGAGGACCCTCTTGACATGTCTAGACAGACGTCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCAGAGGCAGAGGCAGACGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTTACCAAAGAACAATCTGCACTACTGGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAAGTGGACTGTGAATTCTTAAAGAAATGCTGTGAAACATTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCTTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGTCCTTCTTGCGAGAGGCTCGGTGGCGTTAGCGATAACGCTTCCAATAAAAGCCCTTTCTCCATGGCTCCCAAGACTCACTTCTACAACCCCTTTGCCAATCCTTCTGCAGCATGTTGA 867 0.4798 MGFDHEASTSGLHLVLGLSLTATTTPSTKPHQDHHHHHFCVVKPSPTKPNSPNGPSLTLGLSGDTCHLAKQVPNNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEADERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKTHFYNPFANPSAAC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02702 288 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Vimu7g02702 288 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Vimu7g02702 288 MobiDBLite consensus disorder prediction 123 147 - -
Vimu7g02702 288 FunFam Homeobox-leucine zipper protein 18 125 204 - -
Vimu7g02702 288 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Vimu7g02702 288 SUPERFAMILY Homeodomain-like 136 200 IPR009057 -
Vimu7g02702 288 MobiDBLite consensus disorder prediction 25 57 - -
Vimu7g02702 288 SMART HOX_1 141 203 IPR001356 GO:0003677
Vimu7g02702 288 MobiDBLite consensus disorder prediction 116 147 - -
Vimu7g02702 288 Gene3D - 147 197 - -
Vimu7g02702 288 Coils Coil 205 235 - -
Vimu7g02702 288 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Vimu7g02702 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 271 - -
Vimu7g02702 288 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Vimu7g02702 288 CDD homeodomain 143 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02702 Vimu-Chr7 22739462 22740770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02702 1 288 Homeobox Transcription Factor Family AT4G37790 58.472 1.19e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu7g02702 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02702 K09338 - gmx:100784129 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02702 7 22739462 22740770 Vimu7g02702 7 22739462 22740770 PCT