Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02689 ATGGGATACATTTTCACACGTGCTCCTATTCACCCGAGCCTCTATAAACGAAGGAAACTCAAGATGATGGAAATCGCGTCCGCCAATTACTTGCCTGAACTTGAAATGGAGTATCCAACCTTTCTTGATCAGTACCAGATGGATTCTTTTGCATGCCCACTGAATGACTTTGACTTCGAGTCTTTCTCCGGATCCCCAGAGAGCAATTCATCTTATCAGCTAAACTCTGAAACCATTCTAAATTGTTTCCCAGCTCAAAGTCCTGATGATCAGTCATTTACACCTCCAAGACCAACCAAGAGGCTCAAGAACACATTCAATACCTTCAAAACATGTGCCGGTGACTCAATTTCCCACAATGTTTCCACTTCTCCTTCCTCCCACCTCATTTCTTTTGGCCACTTTAATGCTTCACCACGCGCTTCCCAGCAATTTCACAACTTCCATGTAAAGCCTAAAAGCGAAAACCCGTCCAGTGAGAACGTGGACGTTACAGACTTCGTTTCTCAAGGTTCATATCAGGACAAAACTTTCTTCACTTCTGATAATCGAACCAACCAGGTTGGCTTAACCACTAGGAACCCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATCGCTCTTTCTGCCGTCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACGAGAGCGCGTGCAAAATCTAGAGGAGAAAACAGCGAAGATCACAACCGGTTCTTCAGTCCTGGTGAAAAGATCTATTCTCTTTGCTGACGGTGAAAATTCTGACAGCCACTGCCCCAATTCACTCCCTGAAATCGAAGTAAGAGTTTCTGGGAAAGACGTTCTCATAAGAACTCAAAGCGATAAACACAGTGGGCGTGCGGCAGTGATACTCGGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGAAATAACAATATTGACGTAACTATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTCCTGGGAAGGTTACGAAAGGCTTTGAAGCAAGTTGATGGAGCCTAA 1116 0.4471 MGYIFTRAPIHPSLYKRRKLKMMEIASANYLPELEMEYPTFLDQYQMDSFACPLNDFDFESFSGSPESNSSYQLNSETILNCFPAQSPDDQSFTPPRPTKRLKNTFNTFKTCAGDSISHNVSTSPSSHLISFGHFNASPRASQQFHNFHVKPKSENPSSENVDVTDFVSQGSYQDKTFFTSDNRTNQVGLTTRNPIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLRERVQNLEEKTAKITTGSSVLVKRSILFADGENSDSHCPNSLPEIEVRVSGKDVLIRTQSDKHSGRAAVILGELEKLHFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRKALKQVDGA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02689 371 Coils Coil 235 262 - -
Vimu7g02689 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Vimu7g02689 371 CDD bHLH_AtNAI1_like 198 270 - -
Vimu7g02689 371 SMART finulus 202 251 IPR011598 GO:0046983
Vimu7g02689 371 Pfam Helix-loop-helix DNA-binding domain 199 246 IPR011598 GO:0046983
Vimu7g02689 371 Gene3D - 191 261 IPR036638 GO:0046983
Vimu7g02689 371 PANTHER BHLH TRANSCRIPTION FACTOR 35 365 - -
Vimu7g02689 371 Coils Coil 344 364 - -
Vimu7g02689 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02689 Vimu-Chr7 22638159 22640074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02689 23 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.493 1.26e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g02689 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02689 - - var:108334767 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02689 7 22638159 22640074 Vimu7g02689 7 22638159 22640074 ECH
Vimu11g00298 11 3004771 3006849 Vimu7g02689 7 22638159 22640074 PCT
Vimu7g02689 7 22638159 22640074 Vimu11g00300 11 3068651 3070683 PCT