Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02686 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACATCCCAAAAAACAACAACCTCAACCAAACCCTAACACCACAACCACCACCCCTTCTTCTTGGATGTGGAACCCTAGCCAACAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGCTCCTACACCTGCACATACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAATGTCCACCGCCGTGACCGTGCACGCCTCAACCAACCCCCTCCTTCCTCCACCGCCACCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTACCACCAAGCCCTAGTGCACCACCCTTCTCTAATTCCCCCTCTACCAATACCCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTTCAAGCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCTCAACCGGGATCAACACTGCTGCTGTTTCCTCTTTCTACTCTAGCAAAGTGGAACAATCTGCAACTTCTTCCTCTTTCGCTACCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA 744 0.5161 MAAEIGLVSMTQIQKLSQSQHPKKQQPQPNPNTTTTTPSSWMWNPSQQLHHQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLNQPPPSSTATSSLPTSSPYINIPPQDLVANAGLCLLYHLPPSPSAPPFSNSPSTNTLSSSPSPSTLLSISSYPSSNFLMQTSFNFPGAPSTGINTAAVSSFYSSKVEQSATSSSFATGHLEELDLELRLGHKPTQTS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02686 247 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vimu7g02686 247 Gene3D Classic Zinc Finger 72 123 - -
Vimu7g02686 247 MobiDBLite consensus disorder prediction 155 175 - -
Vimu7g02686 247 MobiDBLite consensus disorder prediction 111 128 - -
Vimu7g02686 247 PANTHER OS07G0101800 PROTEIN 53 243 - -
Vimu7g02686 247 MobiDBLite consensus disorder prediction 1 56 - -
Vimu7g02686 247 Pfam C2H2-type zinc finger 81 105 - -
Vimu7g02686 247 MobiDBLite consensus disorder prediction 104 128 - -
Vimu7g02686 247 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Vimu7g02686 247 MobiDBLite consensus disorder prediction 10 48 - -
Vimu7g02686 247 SMART c2h2final6 81 103 IPR013087 -
Vimu7g02686 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vimu7g02686 247 MobiDBLite consensus disorder prediction 159 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02686 Vimu-Chr7 22611988 22613522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02686 39 243 C2H2 Transcription Factor Family AT4G17810 40.865 2.17e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g02686 zf-C2H2_6 2.8e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02686 7 22611988 22613522 Vimu7g02686 7 22611988 22613522 ECH
Vimu7g02686 7 22611988 22613522 Vimu7g02686 7 22611988 22613522 PCT