Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02683 ATGGATTCTCGGGAACCGCACCAGCAACCGCAATTGCCAAACATGATGGTGGGACCCACCACCTACCCTTCCATGTTGGCCCCCGCCACCGCCCGATTTCCTTTCATCAGCAACAATCACCATCACCACCACAACCCTCCTCCTCCACCACCTCCTCCCGAACCTCTCAACGACAACCATTCCTGCGAGGCTGCGCTGAAGCCGTGTGCGCTCGGAGTGGGTTCCTCGGAGTCCTCTAAGAAGAAAAGGGGCCGGCCCAGAAAATATTCTCCAGATGGCAACATTGCCTTGGGCCTGGTCCCAAATTATCCCGCCGCTTCTTCTGCCGAATCTCCCGCCAAGAAGCACCGCGGACGTCCTCCTGGTTCCGGAAAAAAACAGATGGACGCTCTTGGAATCTCTGGAACTGGCTTTACTCCACATGTAATATCAGCGGAAGCTGGCGAGGACATTGCTGCAAAAATTATGGCCTTTTGTGAGCAAGGGCCACGGTCAGTTTGTATTCTCTCTGCCGTCGGTCCTATTCGTAATGTCACTATTCGACAGCCGCCTTCCGTTTCATCCCTATCTGGTCCTGATGTGTCGTATGAGGGTGAATTTGAGATCATATCACTTACAGGTTTTACTCAACAATCTGAAAATAATGGTCATAACGGAATGCGTTCCTTGAATGTAAGTTTAGCTGGTCCTGATGGACGAGTATTGGGTGGCGAAGTTGCTGGAGCTCTTACTGCAGCATCGGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAATAACCTGAAATCTGGACGTTCTACGACGCCATCATCCCAATTGTTAACTTTTGGTGCTCCTACGACTCCGACCACTCCTACTTCTCAGGGGCCTTCAACCGAGTCATCTGAGGATAATGAAAATAGTAATTTTATTAAGGGCCCGGGAGGCCCGGGACTCTCTAACAATGCTAGTCAGCCTATTCATAACCTGCAGATGTACCATCATCAACTGTGGGCTGGCCATAATCAGCAGTGA 1035 0.5072 MDSREPHQQPQLPNMMVGPTTYPSMLAPATARFPFISNNHHHHHNPPPPPPPPEPLNDNHSCEAALKPCALGVGSSESSKKKRGRPRKYSPDGNIALGLVPNYPAASSAESPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIAAKIMAFCEQGPRSVCILSAVGPIRNVTIRQPPSVSSLSGPDVSYEGEFEIISLTGFTQQSENNGHNGMRSLNVSLAGPDGRVLGGEVAGALTAASAVQVVVGSFIADGKKSSSNNLKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGGPGLSNNASQPIHNLQMYHHQLWAGHNQQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02683 344 ProSiteProfiles PPC domain profile profile. 135 278 IPR005175 -
Vimu7g02683 344 MobiDBLite consensus disorder prediction 262 325 - -
Vimu7g02683 344 MobiDBLite consensus disorder prediction 43 57 - -
Vimu7g02683 344 Gene3D - 140 270 - -
Vimu7g02683 344 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Vimu7g02683 344 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Vimu7g02683 344 MobiDBLite consensus disorder prediction 1 18 - -
Vimu7g02683 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 256 IPR005175 -
Vimu7g02683 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 257 - -
Vimu7g02683 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 306 IPR039605 GO:0003680
Vimu7g02683 344 CDD DUF296 139 256 IPR005175 -
Vimu7g02683 344 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02683 Vimu-Chr7 22577460 22581969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02683 80 296 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 48.221 9.63e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02683 - - pvu:PHAVU_002G006700g 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02683 7 22577460 22581969 Vimu7g02683 7 22577460 22581969 PCT