Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02681 ATGAAACTTCGTTCCCCAGATGGAAGATTGAACAAGAAGATGTGTTTAGTACAGTTCTGTATTAATGAGACGATGAATGCTAGAACATTTATAGCCATGGCATCAAAGAGAAAAGGAAACATCCTGCTTTATCCTGTGGGAGCCACCACTGTGTGCTGTGCTGTTTGCCATGCAGTCATTACTGTGCCACCTCCTGGCACTATTGTGCCACCTCCTGATATGGCCCAGTTAGTATGTGGAGGCTGTCACACTCTCCTCATGTACATCCGTGGAGCCACAACTGTGCAATGCTCTTGTTGTCACACAGTCAATCTGGCTTTGGAAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTGAGGTACCCATATGTAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACATTAGTTGGGGTCAGTACAATCTCTTCTTTGGTTAATACTTTACAGTGTGTCACAGATTCAAAAATGCAGGCCTCAACAAGTACCACTGAGCAGAAATTCAGCACCTAA 534 0.4438 MKLRSPDGRLNKKMCLVQFCINETMNARTFIAMASKRKGNILLYPVGATTVCCAVCHAVITVPPPGTIVPPPDMAQLVCGGCHTLLMYIRGATTVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYPYVARSVKCAVCSFVTLVGVSTISSLVNTLQCVTDSKMQASTSTTEQKFST 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02681 177 PANTHER PROTEIN LSD1 37 166 IPR040319 -
Vimu7g02681 177 NCBIfam zinc finger domain, LSD1 subclass 40 59 IPR005735 -
Vimu7g02681 177 NCBIfam zinc finger domain, LSD1 subclass 114 144 IPR005735 -
Vimu7g02681 177 NCBIfam zinc finger domain, LSD1 subclass 76 105 IPR005735 -
Vimu7g02681 177 SUPERFAMILY Multiheme cytochromes 51 141 IPR036280 -
Vimu7g02681 177 Pfam LSD1 zinc finger 117 141 IPR005735 -
Vimu7g02681 177 Pfam LSD1 zinc finger 40 59 IPR005735 -
Vimu7g02681 177 Pfam LSD1 zinc finger 79 103 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vimu7g02681 zf-LSD1 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02681 - - vra:106777714 207.994