Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02638 AGAATGAACTGTTTGTTCTTCAAAAAGAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGGAAGAAGAAAAGCCAGGTTGTGAATGGAGCACCGAAGTCCCCAAGCTCGGTACCATCGCCGAGGAGCATAAAAGAATTGTACAGAGAGAAGGAACAGAGTTACAGAATTTTCAGTTTAAAAGAGCTCGTAGATGCAACAAATGGTTTCAATAGCATGCTCAAGATTGGAGAAGGTGGTTTTGGAAAAGTATATAGAGGAACCATCAGTCCTAAAGATGGAGCTGCTCCAATTGTAGTCGCAATAAAAAAACTTAACGCGCATGGCTTACAGGGACATAAAGAATGGCTTGCAGAAGTTCAATTTCTGAGCGTTGCTAGCCACCCTAATTTGGTCAAGCTTCTGGGATACTGCTCAATAGACAGTAAAAGAGGAATCCAACGGTTGCTGGTATATGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTGTTTCTTTACCTCCTTTGCCTTGGCAAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGTTGCTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCAAGAGAGGGTCCAACAGGTGACAAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCTCCAGAGTATGTTCAAACGGGTCATCTGAAAGCTCAGAGTGATATTTGGAGTTTTGGTGTGGTGCTTTATGAGATCCTGACAGGGAGACGTGCATTGAATAGAAACCGTCCAATAGGAGAACAAAAGCTTGTAGAATGGGTTAAACATTACCCTGCCAACAGTAGCAGGTTCAGCACCATCATCGACCGACGTCTCAATAACCAATACTCTCTTGCTGCAGCTCGGAAAGTAGCCAACTTGGCAGATTGCTGCTTGAAGAAGAATCCTGAACACAGACCCTCCATGAATCAGATAGTGGAAACCTTGAAGCAAGCATTGCAGGATTCACAAACCCAAAACACTTCCCCTAATAACACTTCTAAATCCACACCATCCAGATTGGTCTCAACTACTGAATAA 1143 0.4339 RMNCLFFKKKSKSHPELPKGRKKKSQVVNGAPKSPSSVPSPRSIKELYREKEQSYRIFSLKELVDATNGFNSMLKIGEGGFGKVYRGTISPKDGAAPIVVAIKKLNAHGLQGHKEWLAEVQFLSVASHPNLVKLLGYCSIDSKRGIQRLLVYEFMSNRSLEDHLFSVSLPPLPWQTRLQIMLGAAQGLYYLHNGLEIQVIYRDFKSSNVLLDKQFHPKLSDFGLAREGPTGDKTHVSTAVVGTQGYAAPEYVQTGHLKAQSDIWSFGVVLYEILTGRRALNRNRPIGEQKLVEWVKHYPANSSRFSTIIDRRLNNQYSLAAARKVANLADCCLKKNPEHRPSMNQIVETLKQALQDSQTQNTSPNNTSKSTPSRLVSTTE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02638 380 MobiDBLite consensus disorder prediction 1 43 - -
Vimu7g02638 380 PANTHER OS01G0588500 PROTEIN-RELATED 31 355 - -
Vimu7g02638 380 CDD STKc_IRAK 76 352 - -
Vimu7g02638 380 MobiDBLite consensus disorder prediction 354 380 - -
Vimu7g02638 380 Gene3D Phosphorylase Kinase; domain 1 50 154 - -
Vimu7g02638 380 Pfam Protein tyrosine and serine/threonine kinase 75 350 IPR001245 GO:0004672|GO:0006468
Vimu7g02638 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 364 - -
Vimu7g02638 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vimu7g02638 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 104 IPR017441 GO:0005524
Vimu7g02638 380 Gene3D Transferase(Phosphotransferase) domain 1 155 376 - -
Vimu7g02638 380 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02638 380 SUPERFAMILY Protein kinase-like (PK-like) 52 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02638 Vimu-Chr7 22223119 22225083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02638 2 350 Glycoside Hydrolase AT3G07070 42.659 4.31e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g02638 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02638 - - gmx:100305390 599.356