Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02631 ATGGATGTGAAAAAGAACAACTGTTATAACTGGAGTTGCTTTGTGGGCCGTTCAGATAAACACGTTACAACAAATTTAACGGCGGAGATGAATCCATTTATGGCGAGTGGGACCCAGCGCCGCGGGAACGTTATTCTCCAAATTTCAAAGCGAAAGCAACCTTATCATGCCTTCCATTCCAGCGCTTTGGTGAGAGTGGATATGGAAGAAGAACGATACGAGACTCTGAAGGAGCTTGGTTCGGGGAACTTTGGAGTTGCAAGGTTGGCCAAAGACAAGAAGACAGGGGAACTTGTTGCTATCAAATACATAGAAAGAGGAAAAAAGATTGATGCGAATGTCCAAAGGGAGATAGTAAACCACCGATCTCTAAGGCATCCGAATATTATTAGGTTCAAAGAGGTATTTCTGACCCATACTCATTTAGCTATTGTCTTGGAGTATGCTGCTGGAGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGTATCCTCTATATAAGTATAAATTATCAAGTGGTGGTTTTGATGAATTCCCTTTATCGCAGGCAAGATTTTTCTTCCAGCAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTTGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAGCCTAAGTCAACGGTTGGAACTCCTGCATACATTGCTCCAGAAGTTTTGCAACGAAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCGTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAGAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTTCGTGTATCTAAGGAGTGCAGGCATCTTATCTCTTCTATTTTTGTTGCCAATCCTGCCAAGAGGATCACCATGTCGGAGATAAAACAACACCTTTGGTTTAGGAAGAACTTGCCGAGGGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAGAGTGTGGAAGAAATAATGCAGATCATAGAAGAAGCAAGGACAAAAGTTCACACTCGTGAGCAAACTTCGACAGGATCGTCGAACGTTGTACATGTTGATGAGGCTAACGAGGAAGTTGACCACTTTGTCAAAAATCTAGTCCTTGAGTAA 1275 0.4204 MDVKKNNCYNWSCFVGRSDKHVTTNLTAEMNPFMASGTQRRGNVILQISKRKQPYHAFHSSALVRVDMEEERYETLKELGSGNFGVARLAKDKKTGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTHTHLAIVLEYAAGGELFERICNAGRLSEDEYPLYKYKLSSGGFDEFPLSQARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLQRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISSIFVANPAKRITMSEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMQIIEEARTKVHTREQTSTGSSNVVHVDEANEEVDHFVKNLVLE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02631 424 ProSiteProfiles Protein kinase domain profile. 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02631 424 SMART serkin_6 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02631 424 PANTHER SERINE/THREONINE KINASE 71 387 - -
Vimu7g02631 424 CDD STKc_SnRK2 72 348 - -
Vimu7g02631 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vimu7g02631 424 FunFam Serine/threonine-protein kinase SRK2A 149 357 - -
Vimu7g02631 424 Gene3D Transferase(Phosphotransferase) domain 1 149 356 - -
Vimu7g02631 424 Pfam Protein kinase domain 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02631 424 FunFam Serine/threonine-protein kinase SRK2E 68 148 - -
Vimu7g02631 424 Gene3D Phosphorylase Kinase; domain 1 56 148 - -
Vimu7g02631 424 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vimu7g02631 424 SUPERFAMILY Protein kinase-like (PK-like) 59 361 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02631 Vimu-Chr7 22186084 22190116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02631 72 361 CBL-interacting serine-threonine protein kinases AT4G24400 40.199 1.53e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu7g02631 Pkinase 7.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02631 K14498 - gmx:547797 617.461