Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02628 ATGGATCCATGGAACCTTTCATCCTCCAAGTTTCTCTCTAAACAACTTCCTTACCCTTCTCATCCCTACGCAGAAGAGATTCCCAACACGGGAAATTCCAGTGGTTTGATCAAGGATCTCAGAGGTTCGCAGTTGACAATCTTCTATGATGGCCAAGTTGTTGTCTTTGATGATATTCAATTTGACAAAGCCAAGGATATCATATCTTTTGCCAACACAGGAATCTCCCAAAACCAGAACGGCTATGCTTGCTCGTACCCTACTCCAATTTCTGCTACTTCCAGCAGACCGTTTCCTTTTCTTATGAACATCATCCCTACCACTGCCAACAATTCGGTTCAGGAGCACCCTCAAACACCATCTAAATCTGTTATATGCGATCTACCTTTGGCTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGAAGCCCTTAGTAAGCCAGATGAGTCCACGCCATGGCTCACCTTGGCATCTAAATCGCTACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 585 0.4342 MDPWNLSSSKFLSKQLPYPSHPYAEEIPNTGNSSGLIKDLRGSQLTIFYDGQVVVFDDIQFDKAKDIISFANTGISQNQNGYACSYPTPISATSSRPFPFLMNIIPTTANNSVQEHPQTPSKSVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMEALSKPDESTPWLTLASKSLQDESDSDSSSSFVLF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02628 194 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Vimu7g02628 194 MobiDBLite consensus disorder prediction 173 194 - -
Vimu7g02628 194 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 39 163 IPR040390 -
Vimu7g02628 194 Pfam tify domain 43 72 IPR010399 -
Vimu7g02628 194 Pfam Jas motif 129 154 IPR018467 -
Vimu7g02628 194 SMART tify_2 38 73 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02628 Vimu-Chr7 22177364 22178415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02628 45 177 Tify Gene Family AT1G19180 38.849 1.49e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu7g02628 tify 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02628 K13464 - gmx:100306332 266.544