Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02625 ATGATTTATAATGTTATAGGGGGAGCTTGTGGCTTTGGCGAATATGGAAAAACAGTAAACGATGGAAGTGTTGCAGGCGTGTCCTGGCTATGGAAGAATGGATCTGGCTGTGGGGCATGTTATCAGGTTAGGTGTAAAATAGCAGAATTGTGCGATGAGAATGGAGCATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTCCACGTGGCTACTCAAAATTGGGGAGAAACACGTATGCATCTGCAGAGCTATTGAAATACGGTGTAGTGGATGTAGAATACAGAAGGGTCCCCTGTAGATACGGTGGCTACAACCTCTTGGTTAAGGTCCACGAACACAGCAGAAACCCTCACTACCTGGCCATTCTCATTCTCTACATTGGTGGAACTTTCGACGTCACTGCTGTTGAATTGTGGCAGGAAGAGTGCCAAGAATGGAGGCGAATGCGCAGAGCATTTGGGACAGTGTTTGATGCTGAGAACCCGCCGAGGGGTGACATAAAGTTGAGGTTCCAATTGAGTGGTAATGCAGAGCAGTATTGGGTGCAATCTAAGAATGTTATTTCTGGTGATTGGGAGGCTGGAGCTGTTTATGACTCAGAAATTCACCTTGGCTAA 639 0.4617 MIYNVIGGACGFGEYGKTVNDGSVAGVSWLWKNGSGCGACYQVRCKIAELCDENGAYVVVTDYGEGDRTDFIMSPRGYSKLGRNTYASAELLKYGVVDVEYRRVPCRYGGYNLLVKVHEHSRNPHYLAILILYIGGTFDVTAVELWQEECQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAEQYWVQSKNVISGDWEAGAVYDSEIHLG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02625 212 Gene3D - 107 208 IPR036749 -
Vimu7g02625 212 PANTHER EXPANSIN-B3 7 209 - -
Vimu7g02625 212 SUPERFAMILY Barwin-like endoglucanases 7 110 IPR036908 -
Vimu7g02625 212 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 125 207 IPR007117 -
Vimu7g02625 212 Pfam Expansin C-terminal domain 115 195 IPR007117 -
Vimu7g02625 212 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 7 111 IPR007112 -
Vimu7g02625 212 Pfam Lytic transglycolase 24 101 IPR009009 -
Vimu7g02625 212 SUPERFAMILY PHL pollen allergen 112 207 IPR036749 -
Vimu7g02625 212 Gene3D - 3 106 IPR036908 -
Vimu7g02625 212 PRINTS Expansin/Lol pI family signature 153 167 IPR007118 GO:0005576
Vimu7g02625 212 PRINTS Expansin/Lol pI family signature 6 24 IPR007118 GO:0005576
Vimu7g02625 212 PRINTS Expansin/Lol pI family signature 94 110 IPR007118 GO:0005576
Vimu7g02625 212 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02625 Vimu-Chr7 22154979 22155936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02625 8 211 Expansin Gene Family AT4G17030 60.976 7.74e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02625 - - gmx:100802855 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02625 7 22154979 22155936 Vimu7g02625 7 22154979 22155936 PCT