Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02624 ATGGCGACACCAGAAAATAATGGTCATTCGAAGGAAGAAAGATATGGCGCATTGATGAAAGATGGGGCCACTTCCCCTGTTAGGCCAGTGTTTAAGCGGCGGAAAGTTTCTGCCATTCGTGATTTCCCTGATGGGTGTGGACCATCTGCTTCAAAGATTGATGAAGTATCAAATATAAATACTGAAGGATGTGATTCTGTTAATGGTACAATTGTTGAGGTTAAGAATGGTGAACATTTAGTGGGTGTGAAAACTTCCACATGTGAAAATGATGGTTGGCATTCTGAGGTGAAAGGTTTTCGTTTCACGGAGACTCATGGCCCAACAGCTGACAGTGGTTTGGATAAGGACAACCCCATGGTCTCATCTTATCATGTGGATGGATCTACTGCTGAAGATAAAACGGGAATAGTGACTATTAGCCAAATCAATGATTGTGGATCTACTGCTGAAGATAAACCAGGGGTAGTGACTAATAGCCAAACCACTGATCATGGTTTGAACGAGGAAAGCCCTGTAGACACATCTCATAGAGTGGATGAACATAATGCCGAAGATGAAGCTGCAAAAGTGACTCTTGGGCGAACAACTGATTGTGGTGTGAATCAGGAAATCCCTGTGGTCTCATCTCATCAAGTGGATGGGTCTACTCGAGAAGATAACCCTGCAAAAGTGAAACTTGGTCAAACAGAGGACTGCAGTTTGAATCTGGAAAACCATGAGGTCTCATCACATCAAATGAATGGGTCCGTTGCAGAAGATAAACTGGCAAAAGTGACTGGTGAGCGAACAACTGACCGTGGTTTGAATAAGGAAAACCCTGCAGTTTCATCTCATCTAGTGGATGGCCCTGCTGCCGAAGATAAACCTGCCGAAGATAAACCTGCAGAAGTGCTTTTAATGGACCAGGAAACTTTGAATACAGAGTTTTCAAGAACTGCAAACACTGGAAAATGTAACTCCTCATATATGTTGGAGTCGTCTTCACCAGTGGGTGAGATGGCTGTGCCTGATGGTTCAAAACATTTATCCATTGATAAAACATCAGCTTCCAGTTCTTGTATGGTGGAGCCTATAACTAGAAGGTACCTTCCGCAAAGAAAAGTTTCAGCTGTTAGAAACTTCCCTCCTTTATGTGGACGTAATGCTCCACGTCTCGGTAAGGACAAGCATGTGTGTCTAGAAGGGACCTCTTCTTTGAACAACAAGACAAAAGGTCAACAGAACCTGGTTGTAGATGACAATCCATTGAAAAAAGTAGCAGCTACTGATGTAAAAGAATGTAAAAGTAATATTCAGGATGAATATAATTGCAACAGGAAGCTTGTTGACATCGATCAACTTGATTCTGAAAGAAATTCTGCAGAGAGATTGAAAAAGCTGCGTGCATGTGAACCATCGTCTGAGATGAAAAAGTCACCTGAAAATGAGAGAGAAAAGTATGCTACACCCCCGGAAACAAGTAATCATCATCAGATCAAAATAAATTCTAAGGCGGTGGTAAAAGAGAAAAATAGGAATGAGACAAAGCCTTCGAAGATATCTCAATCTAAGCATATGTTGAAAGGGAATTTTAAGAGATTGCAGGTCACATCACAGAGGAAAGTAATACTAGGTTTGATGGCTGATTCAGAATGTCCGTGGAGGTCTGATAAAGGTACCCCCAAATTTAAGTTGGTTGCTGGTAATAGTAAAGGCAAGAGAAAGGAAGGTGATTCTTTTGCATTGCCTGATAGGTCTAGAACAGAGTATAGTGGTTTGTTGAATGATTCTGAGAAGAAACCTTTGAAAAAGAAAAAGGGAAATCCTGCTTCTGTAGGTATGGGTGAATTAGAACTTTGGGAAAAGGAGGATTATCTTAACCCTAATGAAAATGATGACTCTCTTCAAATTGTTCTGAGATCAAATGAGTTTGATGTAAACCTTACTCCCTCTTCTCATTCGAATTTCACTGGTGATGAGAATGACCCAAATGTGACCCGAAAAAAAGTGAGGGAAACATTACGGTTGTTTCAAGTTATTTGTAGAAAGCTTTTACAGGAAGTAGAATCAAAGTCAAAGGAGCGAGCAAATAATAAGAGAGTTGATTTAGTTGCTTCAAAGATCCTTAAGGAGAATGGGAAATATGTCAACACAGGCAAGCAAATACTAGGCTGTGTTCCTGGTGTTGAAGTTGGTGATGAATTTCAATATAGAGTGGAGCTTAATATAGTTGGCCTTCATCGTCCAATTCAAGGTGGCATAGATTATGTGCGACACAACGGTAAGGTCCTTGCAACCAGTATTGTTGCATCAGGGGGCTATGCTGACGATTTGGATAATTCGGATGTATTGACATATACAGGGCAGGGTGGAAATGTGATGAACAGTGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGATGAACAGTAGTATTGAAAAGAATCCTGTTAGAGTAATTCGTGGCTCTGAGTCAATGGATGGAAAATGCAGGACTTATGTTTATGATGGGTTGTATGTAGTTGAGGCAGGTTGGGATGAACACGGACCACACGGGAAGAAAATTTTTAAATTTCGACTGCAAAGAGAACCTGGTCAACCAGAGCTTCCTTTGAGAGAAGTGAAGAAATCTAAAAAGTTCAAAACTAGAGAAGGTGTATGTGTTGCCGATATTTCTTTTGGAAAAGAACGAATTCCAATATGCGCTGTGAACACCATAGATGATGAAAAACCTCCTCCGTTTAATTACATAACTAGCATGATATACCCCAAATTCCATCTCCTTCCCGCCGAAGGATGTGATTGTATTAGTGGATGCTCAGATTTGGAAAAATGTTCGTGTGTGGTGAAGAATGGGGGAGACATTCCATTCAATCACAATCAGGCTATTGTACAAGCAAAGCCTTTAGTCTATGAGTGTGGACCTACTTGTAAGTGTCCTTCAACGTGCCATAATAGAGTCAGCCAACTTGGCATAAAGTTTCCACTTGAAATATTTAAAACCCAGTCAAGGGGATGGGGTGTGAGATCCCTGAGTTCAATCCCTTCAGGAAGTTATATCTGTGAATATATAGGGGAGCTTCTTGAAGAAAAGGAAGCTGAACTAAGGGCAGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTGCAGCAACAGTACTACTCTCTGGGATGGACTTACGACTCTCATGCCAGATGCACAGACAAGTTCCTGCGATGTTGTGAAGGATGGTGGTTTTACTATTGATGCTGCTGAGTTTGGCAATATAGGGAGATTCATTAACCATAGTTGCTCACCTAATATAATTGCTCAGAACGTCCTTTATGATCATCATGACACCAGAATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCTTTGCAAGAGCTGACCTACGATTACAATTACGAACTAGATCAAGTCCGCGATTCTGATGGTAATATAAAAAGGAAGTATTGTTACTGCGGTTCTGCTGAATGTACTGGCAGGATGTATTGA 3504 0.4087 MATPENNGHSKEERYGALMKDGATSPVRPVFKRRKVSAIRDFPDGCGPSASKIDEVSNINTEGCDSVNGTIVEVKNGEHLVGVKTSTCENDGWHSEVKGFRFTETHGPTADSGLDKDNPMVSSYHVDGSTAEDKTGIVTISQINDCGSTAEDKPGVVTNSQTTDHGLNEESPVDTSHRVDEHNAEDEAAKVTLGRTTDCGVNQEIPVVSSHQVDGSTREDNPAKVKLGQTEDCSLNLENHEVSSHQMNGSVAEDKLAKVTGERTTDRGLNKENPAVSSHLVDGPAAEDKPAEDKPAEVLLMDQETLNTEFSRTANTGKCNSSYMLESSSPVGEMAVPDGSKHLSIDKTSASSSCMVEPITRRYLPQRKVSAVRNFPPLCGRNAPRLGKDKHVCLEGTSSLNNKTKGQQNLVVDDNPLKKVAATDVKECKSNIQDEYNCNRKLVDIDQLDSERNSAERLKKLRACEPSSEMKKSPENEREKYATPPETSNHHQIKINSKAVVKEKNRNETKPSKISQSKHMLKGNFKRLQVTSQRKVILGLMADSECPWRSDKGTPKFKLVAGNSKGKRKEGDSFALPDRSRTEYSGLLNDSEKKPLKKKKGNPASVGMGELELWEKEDYLNPNENDDSLQIVLRSNEFDVNLTPSSHSNFTGDENDPNVTRKKVRETLRLFQVICRKLLQEVESKSKERANNKRVDLVASKILKENGKYVNTGKQILGCVPGVEVGDEFQYRVELNIVGLHRPIQGGIDYVRHNGKVLATSIVASGGYADDLDNSDVLTYTGQGGNVMNSDKEPEDQKLERGNLALMNSSIEKNPVRVIRGSESMDGKCRTYVYDGLYVVEAGWDEHGPHGKKIFKFRLQREPGQPELPLREVKKSKKFKTREGVCVADISFGKERIPICAVNTIDDEKPPPFNYITSMIYPKFHLLPAEGCDCISGCSDLEKCSCVVKNGGDIPFNHNQAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFPLEIFKTQSRGWGVRSLSSIPSGSYICEYIGELLEEKEAELRAGNDEYLFDIGNNCSNSTTLWDGLTTLMPDAQTSSCDVVKDGGFTIDAAEFGNIGRFINHSCSPNIIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYELDQVRDSDGNIKRKYCYCGSAECTGRMY 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 462 485 - -
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 462 494 - -
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 563 577 - -
Vimu7g02624 1167 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 432 1161 - -
Vimu7g02624 1167 Pfam SET domain 1004 1137 IPR001214 GO:0005515
Vimu7g02624 1167 SMART G9a_1 713 865 IPR003105 -
Vimu7g02624 1167 SUPERFAMILY SET domain 877 1143 IPR046341 -
Vimu7g02624 1167 Pfam SAD/SRA domain 717 865 IPR003105 -
Vimu7g02624 1167 ProSiteProfiles SET domain profile. 993 1137 IPR001214 GO:0005515
Vimu7g02624 1167 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 296 1167 IPR025794 GO:0016571
Vimu7g02624 1167 SUPERFAMILY PUA domain-like 701 874 IPR015947 -
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 585 599 - -
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 551 604 - -
Vimu7g02624 1167 ProSiteProfiles Post-SET domain profile. 1151 1167 IPR003616 -
Vimu7g02624 1167 Gene3D SET domain 882 1167 IPR046341 -
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g02624 1167 ProSiteProfiles YDG domain profile. 718 861 IPR003105 -
Vimu7g02624 1167 SMART preset_2 887 977 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 262 292 - -
Vimu7g02624 1167 Gene3D - 701 881 IPR036987 -
Vimu7g02624 1167 Pfam Pre-SET motif 890 985 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g02624 1167 ProSiteProfiles Pre-SET domain profile. 930 990 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 146 179 - -
Vimu7g02624 1167 MobiDBLite consensus disorder prediction 146 169 - -
Vimu7g02624 1167 SMART set_7 993 1143 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02624 Vimu-Chr7 22147472 22154379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02624 658 1164 Su(var)3-9 homologs AT5G04940 40.684 2.95e-115 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu7g02624 Myotub-related 9.9e-05 CL0031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02624 K11420 - gmx:100803378 1409.82