Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02621 ATGTGGGTCTCCTTAATTGGAACAACACTCACTGCATTTAAGGTCTTTATCAAAGAGTCAACCCACAGTTCATGTCTTGCTGTTTGGATGTTTTTCACCGTGCCAGAGGATATTGGAAACATTGCATTCATCTCATCCTTCAGACATGACTTGCTACTCCCTTGCTCTCTCATTGCAACAGGCACACCACTCTGGCGCAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGGTGGAGGACCAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAACAGAAACTGATGCTTGTGGGGATCAAAGGGTTTCCAGGGTAAAGAGCATATCAAATAAGAAGAGAGAAGTGACATTGCTCAAGCCAAATAATGACCATGATAATGAACTATCTGGAGGGTTTGCACCTGATTACAACCAGGGATGTCAAATCTTCGCAGATGAAGATGTAAGCAACCGATCGAGTTCCGGATCAGCTATTTCTAACTCAGAGAGCTGTGCACAATATGGTGCCATGGATGCTTGTGATCTGACAGGTCCTGTTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGCGTTGGCCGGCCAAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACCATTCTTCATGAACAACAGTCTTATTTCTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTATATAGTCCGTGATGAAGAGTCTGAGGCTAGTTCTCTTTCAGTTGATAATAAACAATGCCCAACGAGTGAGGCATATTCTTATGTTGGTCCCATTATGATGCATAATGATTCTAGTTACTTGAAGCGATCATCTCTGGAAGTTGAAAAGATCAGGAAATATACTGACCAAGGATGGCAGCCGGAACAACATAAAAGGCACGCTTTCACAAACTAG 999 0.4344 MWVSLIGTTLTAFKVFIKESTHSSCLAVWMFFTVPEDIGNIAFISSFRHDLLLPCSLIATGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDACGDQRVSRVKSISNKKREVTLLKPNNDHDNELSGGFAPDYNQGCQIFADEDVSNRSSSGSAISNSESCAQYGAMDACDLTGPVQSVVWDAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSYIVRDEESEASSLSVDNKQCPTSEAYSYVGPIMMHNDSSYLKRSSLEVEKIRKYTDQGWQPEQHKRHAFTN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02621 332 CDD ZnF_GATA 62 100 IPR000679 GO:0006355|GO:0043565
Vimu7g02621 332 PANTHER OSJNBB0038F03.10 PROTEIN 61 284 IPR044589 -
Vimu7g02621 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 60 92 - -
Vimu7g02621 332 SMART GATA_3 49 100 IPR000679 GO:0006355|GO:0043565
Vimu7g02621 332 Gene3D - 55 125 IPR013088 GO:0006355|GO:0008270
Vimu7g02621 332 Pfam GATA zinc finger 60 88 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02621 Vimu-Chr7 22136239 22138659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02621 59 327 C2C2-Gata Transcription Factor Family AT4G17570 55.474 4.57e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu7g02621 GATA 1.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02621 - - gmx:100803914 429.869