LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g02606	ATGGCTTCCTTAACCCTCCTTATACCAACACTTATCTCTCTTCAATTTCATCTTCTTTCATTAACTTTTGCACAAGTTAATATCGGTTCCACAATTGCCACCGACAACAATGGAGTGTGGCGTTCACCTTCGGGTCATTTTGCATTCGGGTTTCGCGCATTGAATAATAACACGGATCCCAATACAAAGCTGTTCATGGTTGCCATCTGGTACGACCTGATACCCGACAAGACCGTTGTTTGGAGTTTAAAAACAGACAACAAACTTGCAACAGCACCAGCGGGATCACAGTTTCGGATTTCTTCGGCGGGGCTAACACTGGCGGGTCCCGAAGGAGATTCCATATGGGCATCAAACCTTGCAAGTGTTGTCTCCGTAGGTTCTATGCTTGATACTGGCAACTTTGTTCTACTGACTGGGAACTCCGAAAAGCTGTGGCAAAGTTTTGAGCACCCCACCGACACGTTGTTGCCTACCCAATCTCTCCAACCTGAAGGCACGCTAACATCTCGATTAACAGACACTAATTACACGACTGGAAGGTTCCAACTTTATTTTAAGGATGGTAATGTCTTTCTGAGTCCTCTTGCATGGCCTTCTCCACTGCTTTACAACCCTTATTATGTGTTGAATGCCTCTGGTGCTGCTTCAACATTAGTGTTCAATGAGTCGGGGAATATCTACGTAAACACCACAAATGGGACTATAATCCAACCTCAAGGTTCCCAATGGAATATCTCGGATCTCGATCCTGAGGTGAATTACTACAGAGCAACGCTTGACTCCACTGGAGTTTTCACCCAGTATTATCATCCACGGAACAACACTGCTCAGTCAGGGTGGAGAATCATGAGGTATGTTCCTGACAACGTTTGCGATAATATAACTAATAATTATGGTAGCGGTTCCTGTGGCTACAATAGCTACTGCTCCATGGAAAATCAGAGCCCTAACTGCACATGCCCTTATGGGTATTCGCTGCTGGATCCAAGTAATCCACTTGGTGGATGCCAACCCAATTTCACCCTTGTTTGTGGAGCTGATGTTCAAGCACCGCCAGAAGAACTATATGAAATGAATGCATCTCAAGATTTTAATTTTCCTGAGGGGGATTATGAAAGAATACAACCTTACTCTAAGCAGGAATGCCAGCAGTTTTGCCTGCAGGATTGCATGTGTGCTATGGCCGTTTCAGGAGGCGATACTTGTTGGCTGAAGAGATTTCCCCTTGGTAACGGTAGACAAGAAGCAGTCACAGGTCGACATGTTGTCTATATCAAAACAAGAGTTGTTCGCGACTTTTATACAGGTGCAAACGGGGAACCTTCTCCTCCTCCGGATTCAAAGATAGAACATGAAGCTAAGCTGTTTCTTTTGGGGCCGCTAATTGGTTCTCTTGTCCTAAACAGTTTTCTATTTGCTACAGTTGCTTTGTTTATTCTCAAAAGGCAGAAAGTGAATAGGGTTTCCAAAGCCGCTCCTAGTCTTTTGGAAACGAATTTGCATTCGTTTACTTATGAAAATTTGAAAAATGCCACAGAGAATTTTCAGGAGGAAATAGGCAGAGGTTCTTTTGGCATTGTTTACAAAGGACAACTAGAAGGAGGTTCTTGTCATGTGATTGCTGTGAAGAGATTGGACAGATTGGTAGACGAACGAGAGAAAGAATTTAGGACTGAATTGAGTTCCATCGGTAGAACCTGCCACAAAAATCTGATCAGGTTAATCGGATTTTGTGACGAGGGAATCAATAGAATATTGGTGTACGAGTTCATGAGCAACGGTAGTCTTGCAGACATCCTGTTTGGGAAATCCAAGCCGAGATGGAATGTAAGGGTTGGATTTGCATTGGGGATTGCAAGAGGGTTGGTATACTTGCACGAAGAGTGTGAGACTCCCATTATTCATTGTGATATAAAACCTCAAAATATACTCATAAACGAGTATTTCAATCCAAAGATATCAGACTTTGGGTTGGCGAAGTTTTTGTTGTCTGAGCAAAGTAGAACGACCACAATGATCCGAGGAACACCGGGATACGTGGCTCCTGAATGGTTTAAGAATGTTGGTGTGACGGTTAAAGTGGATGTCTACAGCTTTGGGGTAATGCTGTTGGAAATAATTTGCAGCAGAAGAAGTGTGTTAAAGATGGAGGCTGGGGAAGAAGAGAAGGCAGTGCTGACAGATTGGGCTTGTGATTGCTTTGTGGAAGGAAGAATAGATGTTCTTGTGGAGAATGATGAAGAGGCCTTATCTGACTATGTGAGGCTACAAAAATGGGTGAAAATTGCAATATGGTGCATTCATGATGAACCTCAAATGAGACCAACAATGGGGATTGTCATGCAAATGCTCGAAGGCTTGGTTGAAGTTCCTAACCCACCATCTCTCATGCTGACATGTGGCACTGTCAGTGCCACCTCACACTGCCATTGCTACGTGGCGCAATGTCAACTTGACACGGTGGGTCATTTTCTTGTGCCTACAGGAGAGCTTTTCTCCTTCTCGTGCATCCAACCCAGCCTTAGGGCTATTACTGGAGCAAGCCAATCCCAAACAGTTCGCTCCTTATGTCTCTGTGCCTCACTCGCGGACCATCTAATCTTGGAGAAGAGGGTTTTCGGTTCGTGGCTTAGTGGTGACGAAACTCCGGCCAGTGATTCGCGCCTATGGAGCGACTATTGCGCGGCGGAGGCATTCCGCGAAGAGGGCCTCTACGGCGAGGATTTCGTTTGGGGATTTTTAGATTTTTGTTCTGATATATGGAGTTTTGTCAATTGGGAGATAGTGGTTTCGTTCCAAATTGATTTATGTGGTGTCTGGTCTTGTAATCTTCATCTTGCAATTCTTTTTCTTGTTGGGGTTGAAGATGGTGTCGCCATGGAGGTTTCTTCCTAA	2898	0.4444	MASLTLLIPTLISLQFHLLSLTFAQVNIGSTIATDNNGVWRSPSGHFAFGFRALNNNTDPNTKLFMVAIWYDLIPDKTVVWSLKTDNKLATAPAGSQFRISSAGLTLAGPEGDSIWASNLASVVSVGSMLDTGNFVLLTGNSEKLWQSFEHPTDTLLPTQSLQPEGTLTSRLTDTNYTTGRFQLYFKDGNVFLSPLAWPSPLLYNPYYVLNASGAASTLVFNESGNIYVNTTNGTIIQPQGSQWNISDLDPEVNYYRATLDSTGVFTQYYHPRNNTAQSGWRIMRYVPDNVCDNITNNYGSGSCGYNSYCSMENQSPNCTCPYGYSLLDPSNPLGGCQPNFTLVCGADVQAPPEELYEMNASQDFNFPEGDYERIQPYSKQECQQFCLQDCMCAMAVSGGDTCWLKRFPLGNGRQEAVTGRHVVYIKTRVVRDFYTGANGEPSPPPDSKIEHEAKLFLLGPLIGSLVLNSFLFATVALFILKRQKVNRVSKAAPSLLETNLHSFTYENLKNATENFQEEIGRGSFGIVYKGQLEGGSCHVIAVKRLDRLVDEREKEFRTELSSIGRTCHKNLIRLIGFCDEGINRILVYEFMSNGSLADILFGKSKPRWNVRVGFALGIARGLVYLHEECETPIIHCDIKPQNILINEYFNPKISDFGLAKFLLSEQSRTTTMIRGTPGYVAPEWFKNVGVTVKVDVYSFGVMLLEIICSRRSVLKMEAGEEEKAVLTDWACDCFVEGRIDVLVENDEEALSDYVRLQKWVKIAIWCIHDEPQMRPTMGIVMQMLEGLVEVPNPPSLMLTCGTVSATSHCHCYVAQCQLDTVGHFLVPTGELFSFSCIQPSLRAITGASQSQTVRSLCLCASLADHLILEKRVFGSWLSGDETPASDSRLWSDYCAAEAFREEGLYGEDFVWGFLDFCSDIWSFVNWEIVVSFQIDLCGVWSCNLHLAILFLVGVEDGVAMEVSS	965

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g02606	965	Pfam	Protein kinase domain	517	783	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g02606	965	Gene3D	Phosphorylase Kinase; domain 1	477	591	-	-
	Vimu7g02606	965	CDD	STKc_IRAK	520	788	-	-
	Vimu7g02606	965	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	634	646	IPR008271	GO:0004672\|GO:0006468
	Vimu7g02606	965	Gene3D	Transferase(Phosphotransferase) domain 1	592	791	-	-
	Vimu7g02606	965	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	592	793	-	-
	Vimu7g02606	965	SUPERFAMILY	Protein kinase-like (PK-like)	494	786	IPR011009	-
	Vimu7g02606	965	ProSiteProfiles	Bulb-type lectin domain profile.	30	150	IPR001480	-
	Vimu7g02606	965	SMART	blect_4	29	152	IPR001480	-
	Vimu7g02606	965	SUPERFAMILY	alpha-D-mannose-specific plant lectins	65	190	IPR036426	-
	Vimu7g02606	965	Pfam	D-mannose binding lectin	78	163	IPR001480	-
	Vimu7g02606	965	SMART	serkin_6	514	761	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g02606	965	ProSiteProfiles	Protein kinase domain profile.	514	789	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g02606	965	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	31	796	-	-
	Vimu7g02606	965	ProSitePatterns	Protein kinases ATP-binding region signature.	520	544	IPR017441	GO:0005524
	Vimu7g02606	965	Gene3D	-	25	151	IPR036426	-
	Vimu7g02606	965	FunFam	S-receptor-like serine/threonine-protein kinase	483	591	-	-
	Vimu7g02606	965	Gene3D	-	153	283	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g02606	Vimu-Chr7	22031718	22037533	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g02606	465	790	Receptor kinase-like Gene Family	AT5G45780	40.000	8.48e-67	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vimu7g02606		Pkinase	5.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g02606	-		-	gmx:100789263	1121.69