Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02603 ATGGCAAACCCAAACGCTTTTCAACTTTCTGCTCTCAATCAAATAAAACTGCATCTTCTCGGAGAACTCTCTCCTCTTCCAATCACACCCTCTTCTAATAACTTCTCTTTTCTATTTGATGAACCAAACCCCACCTCATCTCAATCAAGCTCCCTCTCTTCCCAATCTTCAACTTCTCAGTCGTCTGCAACAATGGACCAATTTTTCTCTGACTTTTTCGACTTCCCAACTACTTCCTCGGAACACCAGTTCCCCCGTTTCGAAATCGAGTCCAAACCCCAAATAATCGATCACCAGACTTCGAATCCACACCCTCAAACATCAACCTCCGATTTCACGTTTCCGAACACGCATGACCGGAAGAAACCTCAGTCAAATCGAAAACCGTCGCTGCAAATCTCTCTCCCGCAAAAGACGGAGTGGATCCAGTTCGGAGAGGGTGAGGTTGCGGGAAAGGTGGTGCAGCCGGCCGCAGAAGAGAAAAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAGCGTGGCTCCAGGGTGTGGCTGGGGACGTTCGAAACGGCTCTGGAAGCAGCCAAAGCCTACGACCGAGCCGCGTTCAGGTTTCGCGGTTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAGCCGCAAACGCCAAAGGGAAGAGGAAGAGCCAGTGGTGGAAGTCGTTAAGAGGGAAAAGGTAGAACATTTCGACGTCACCTGTATTAAGGATGCTCCCTTAACGCCGTCTAGCTGGCCAGGCTTCTGGGGTTCCGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGCTATCTCCTCATCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGA 903 0.5227 MANPNAFQLSALNQIKLHLLGELSPLPITPSSNNFSFLFDEPNPTSSQSSSLSSQSSTSQSSATMDQFFSDFFDFPTTSSEHQFPRFEIESKPQIIDHQTSNPHPQTSTSDFTFPNTHDRKKPQSNRKPSLQISLPQKTEWIQFGEGEVAGKVVQPAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRFRGSKAILNFPLEAGADSRKRQREEEEPVVEVVKREKVEHFDVTCIKDAPLTPSSWPGFWGSDANGIFAVPPLSPLSPHPALGYPQLMVV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02603 300 Gene3D AP2/ERF domain 162 223 IPR036955 GO:0003700|GO:0006355
Vimu7g02603 300 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Vimu7g02603 300 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Vimu7g02603 300 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Vimu7g02603 300 Pfam AP2 domain 163 213 IPR001471 GO:0003700|GO:0006355
Vimu7g02603 300 MobiDBLite consensus disorder prediction 97 132 - -
Vimu7g02603 300 SUPERFAMILY DNA-binding domain 163 222 IPR016177 GO:0003677
Vimu7g02603 300 FunFam Ethylene-responsive transcription factor 2 162 223 - -
Vimu7g02603 300 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Vimu7g02603 300 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Vimu7g02603 300 MobiDBLite consensus disorder prediction 97 114 - -
Vimu7g02603 300 MobiDBLite consensus disorder prediction 37 59 - -
Vimu7g02603 300 PANTHER DNA-BINDING DOMAIN 66 233 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02603 Vimu-Chr7 21993320 21995859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02603 1 300 AP2-EREBP Transcription Factor Family AT4G17490 43.425 1.78e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g02603 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02603 K09286 - gmx:100808173 371.318