Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02595 ATGATTGAACTCTCCACTCCCACCCATTTTCCCTCCTTTCTATATAATCCCTCCCACACACACATCTTCTCCACTTCATACTCACCCATTAACTCTCTCTCACAATACCTCATTCATTTCACCCAATCTCTCACCAAAATCCAATCATCTTCTCTCACAAGGCTTATCACGTTATTTGAGATGACGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACTCCTCTTCATCTCAATCTTCTCTCCACTTCAACTTATTCTTCTTCTCCTTCAAGCCTTCACAAACCCTCTTGGAACGACCCTTTCGCTTCTTCAGGTGAAGCTGGATCGTTCCTCCGCGGAATCGACGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCGGGTGTCTCGTCTCCAAACAGCACGGTTTCTAGCGTAAGCGAAAAGCGTAGCGAGAGGGAAGCCAACGGGGAAGAAGAGCACGACACAGAGAGAGGTTGTTTCAGAGGCATCAGCGACGAAGAAGAAGGTGAAAATTGTAGAAAGAAACTTAGACTCTCCAAAGACCAATCCATTATTCTGGAAGAGAGTTTCAAAGAACACAGCACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTGCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACAAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGGTGCTGCGAGAATCTGACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTCAGAGCACTGAAACTTTCCCCACAGTTTTACATGCACATGACTCCACCCACCACCCTCACCATGTGTCCCTCTTGTGAGCGTGTAGCTGTTCCCCCTTCCGCTGCCGTTGATGCCGCCGCGCGTCACCATCACGTGCCCCAGACCCACTCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCGCTCCGTCCCAGATCTTGA 1047 0.5014 MIELSTPTHFPSFLYNPSHTHIFSTSYSPINSLSQYLIHFTQSLTKIQSSSLTRLITLFEMTAEKEDLGLSLSLSFPHNAPTPLHLNLLSTSTYSSSPSSLHKPSWNDPFASSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTERGCFRGISDEEEGENCRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAAVDAAARHHHVPQTHSRAFPIGPWATSAAPISHRPFDALRPRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02595 348 MobiDBLite consensus disorder prediction 134 175 - -
Vimu7g02595 348 Pfam HD-ZIP protein N terminus 63 158 IPR006712 GO:0005634
Vimu7g02595 348 Pfam Homeodomain 185 239 IPR001356 GO:0003677
Vimu7g02595 348 ProSitePatterns 'Homeobox' domain signature. 216 239 IPR017970 GO:0000981|GO:0006355
Vimu7g02595 348 MobiDBLite consensus disorder prediction 151 175 - -
Vimu7g02595 348 CDD bZIP 234 273 - -
Vimu7g02595 348 CDD homeodomain 185 242 IPR001356 GO:0003677
Vimu7g02595 348 SMART halz 241 284 IPR003106 GO:0006355|GO:0043565
Vimu7g02595 348 PRINTS Lambda-repressor HTH signature 221 237 IPR000047 GO:0003677
Vimu7g02595 348 PRINTS Lambda-repressor HTH signature 212 221 IPR000047 GO:0003677
Vimu7g02595 348 Pfam Homeobox associated leucine zipper 241 275 IPR003106 GO:0006355|GO:0043565
Vimu7g02595 348 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 88 315 - -
Vimu7g02595 348 Coils Coil 240 277 - -
Vimu7g02595 348 SUPERFAMILY Homeodomain-like 183 249 IPR009057 -
Vimu7g02595 348 ProSiteProfiles 'Homeobox' domain profile. 181 241 IPR001356 GO:0003677
Vimu7g02595 348 FunFam Homeobox-leucine zipper protein 18 174 246 - -
Vimu7g02595 348 SMART HOX_1 183 245 IPR001356 GO:0003677
Vimu7g02595 348 Gene3D - 189 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02595 Vimu-Chr7 21962622 21964202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02595 61 348 Homeobox Transcription Factor Family AT4G16780 64.026 5.78e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu7g02595 HD-ZIP_N 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02595 K09338 - gmx:100783851 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02595 7 21962622 21964202 Vimu7g02595 7 21962622 21964202 PCT