Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02581 ATGGTGAAGATCACTCTTGGTAGCTTTGAAGACTCTTTTAGCGCTGCCTCTCTCAAGGCCTATTTTGCAGAACTTCATGCCACTCTCATTTTCGTCTTTGCTGGTGTTGGATCAGCCATTGCTTACAACGAGGTGACGAAAGATGCTGCATTGGATCCAACGGGGCTGGTGGCAGTAGCGGTGGCACACGCATTCGCACTGTTTGTAGGTGTCTCTGTTGCAGCCAACATCTCAGGTGGACATTTGAACCCAGCTGTCACATTTGGATTGGCTGTCGGAGGCAACATCACCCTCCTAACTGGTTTCTTGTACTGGATTGCTCAATTGCTCGGTGTGGTGTGGGAAGTTATTATCACTTTTGGGTTGGTTTACACAGTGTATGCAACTGCAGCTGACCCTAAAAAGGGCTCATTGGGCACCATTGCACCCATTGCTATTGGGTTCATTGTGGGTGCCAACATCTTAGCTGCTGGCCCATTCAGTGGTGGGTCCATGAACCCAGCCCGCTCATTCGGCCCAGCTGTGGTCAGTGGAAACTTCGCTGATAACTGGATCTACTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGGCTCATTTATGGAGATGTCTTCATTGGTTCCTATGCCGCTGTCCCAGCCTCTGAAACCTATCCTTAA 660 0.5015 MVKITLGSFEDSFSAASLKAYFAELHATLIFVFAGVGSAIAYNEVTKDAALDPTGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAVGGNITLLTGFLYWIAQLLGVVWEVIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDVFIGSYAAVPASETYP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02581 219 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu7g02581 219 PRINTS Major intrinsic protein family signature 184 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu7g02581 219 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu7g02581 219 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu7g02581 219 PANTHER AQUAPORIN-8 111 207 IPR034294 -
Vimu7g02581 219 Gene3D Glycerol uptake facilitator protein. 113 211 IPR023271 -
Vimu7g02581 219 Gene3D Glycerol uptake facilitator protein. 2 112 IPR023271 -
Vimu7g02581 219 Pfam Major intrinsic protein 112 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu7g02581 219 SUPERFAMILY Aquaporin-like 16 206 IPR023271 -
Vimu7g02581 219 ProSitePatterns MIP family signature. 81 89 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02581 Vimu-Chr7 21865389 21867785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02581 1 216 Major Intrinsic Protein MIP AT5G47450 70.040 1.85e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02581 K09873 - gmx:100527333 374.785