Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02567 ATGGAGGGAAGAATGGTAGTAGTAGAAGGACATTTAGAAGCGGTCGAAGTGGCAATCGCCGAGACAAAAGCTGATACGGGGGCGTTGCGACAGGAGACGGCGGCGATACGACAGGACGTCCAGGCCATCTTGAAGGCGCTTGGAGAACGTAACCCCAATCACCATGGGAAGCGACAGGGGGAGAGTGAGTCGTCGGTGAACGATAATGGTGGTGGTCCCAAAGGTGAAGGTGGAAGAAGTGGAGACGGTAACCAAGGGGGTTTGAGCCAATGGAGGAAGCGAGTCGAATTACCAGTCTTTGAGGGGGGCGAACCTTGGGTATGGATAGGCAGAGCGGAAAAGTTTTTCGAAGTACAGAAGGTGGCGGAGGAGGAGAAACTGGAACTGGCCTTTATCAGTATGGATGGCTACGTCGGAAGCTGGTTCCGATTCTGGCGAGAGAAAACCAAGAACCTTTCTTGGGATGGGTTGAAGAGGGCTCTGGGTATCCGATTTGGAGTTGGAACACGAGGGACGGTGTACGAGAGGCTGTCAACCATACGACAGTCGGGACCGGTGGAGGAGTACATACGTGATTTTGAAGTTTTGGTGGGTCAGACGACCCAGATACCAGAGAAGCAGATCATGGGGTATTTCCTGTCCGGGCTAAGGGAAGAGGTGGGCGATCATGTCTGGCCACATGACCCACCGGATTTGATGACTGCCATGCGAGTGGCGAGGGATGTGGAGAAATTGTGCACGAAGACCGGAGGAGGGTGGTTATCCAAGAATCAAAGTTCTTGGGGCAAGGCGTCGGGTTCGGTAACGCGAGTTGAACCGAATCGAGAGACAACGGTACGTGTAGGAACGGCGGAAAGCGTTGGGTCGGTTAATAAAGACGCGACCCAAGGGCGGAATAAGGGGGTGGCTACCAGTAGCGGAGGTGATCGGAATGTTCGAAATCTGCCTTACTCGGAGTATCTTAAACGGAGGGAAGAGGGTCGTTGTTTCAGGTGCGGCGGACCCTTCGGCCCCGGCCATCGTTGCCCAGAGAGGGGTCTCAAAATGCTAATTGTGGTAGAGGAAGAGGAAGAGGCCGAAGGCGACGAGGTGAAGGAGACGAACCTTGCGAAAATGGAGTTATCGGCGCTGTCCGCCGGCGGGCTAACGACACCCAAAACGATGAAGTTACGAGGACACATCGGACACAGAGAGGTGTTAGTTTTAATTGATAGTGGCGCGAGCCACAACTTCATTGATAGGCGGGTGGTGGAGGAACTGCAGATGACGGTGACAAAGACGCAGCCCTATATGGTGAGTCTGGGAGACGGTCAAAAGAAAAGAATTAGCGGGTGTTGTGAGGGAGTGAAGTTGGAGCTTGGGGAAGCTCAGTTGATCGAAAGATTTTACTTATTTGAACTTGGGGGAGTTGAAATAATTCTTGGGGTGGAGTGGTTGCAGAGGTTGGGAGAAGTAATGGTGGACTGGGGAAAGTTGAAGATGATGTATAAGGAGGGAGGAAGAGAGGTGACGGTGAGGGGTGACCCCACGTTGGAACGCAAAGTGGTGGGCCCCAGGGTGCTCATGAAAATGGATAGAACCGAGACTTGTTATGTGGTCTGGGAGTTGGGCTCAATGGAGGCCCAACAAAATAGACTGAAGAACGTGGGCCTCACTGAAAAACAGAAAAGAGAGATGGAGAGTCTTCTGGAGAATTATGACGTGGTGTTCTCTGAAGCAAAGACGCTGCCACCTAACCGAGCGGTCGAACACCACATACAACTTAAAGAGGGGGTCGATCCAGTTAACGTCCGGCCATACCGGTATCCGCATGCCATCAAAGCTGAGATAGAGCACCAAATCGCAGAAATGCTACGGACGGGGGTGATCCGACCGAGCCACAGCCCCTACTCAAGCCCGGTGATCCTAGTAAAGAAGAAGGACGACAGCTGGCGGTTTTGCATCGACTACCGGGCACTCAACCGAGCGACGGTGCCAGACAAGTTTCCAATTCCGGTGATCGAAGAGTTGTTGGACGAGCTAAACGGGGCGTCTTACTTTTCGAAAGTCGACCTAAAAGCGGGTTATCATCAAATCCGCATGAGCGAACGGGACGTGGAGAAAACAGCATTTCGAACTCATCAAGGGCACTACGAGTTCGTCGTCATGCCGTTCGGGCTTACGAACGCGCCGGCAACCTTCCAGAGTGCAATGAATGCACTGTTTCAGCCCTATCTGCGCAGGTATGTTCTCGTATTCTTTGACGACATTTTGGTATACAGCCGCACGTGGGAGGAGCATCTTGAACATGTTAAATGCGTACTCACGATTCTGCAACGAGACCAGTGGGTTGCGAACAAAGGAAAATGTGAATTTGGGCAGACCCAAGTTAAGTACTTGGGGCACATCGTCTCCAGCAGAGGGGTAGAGATGGACGACGAGAAGATCAAGGCGGTGGTGGAATGGGAGCGTCCGAAAACAGTGAAAAGTTTGAGGGGATTTCTGGGGTTAACGGGGTACTACCGGAGGTTCGTCCGGGATTATGGCAAGATCGCCAGACCCTTGACGGAATTGCTGAAGAAAGGGGGATTCTCGTGGAATGAAAAAGCTGAGGAGGCGTGGGTAAATTTGAAGAAAAAAATGACGACAGCGCCAGTATTATCTTTGCCCGATTTCACACAACCTTTCCACATAGAATGTGATGCATCGGGAAGTGGCGTGGGGGCCGTGTTGATGCAAGGAAGAAACCCGATAGCCTACTTTAGCAAGGCTTTGTCCGAGGGAAAGTTGAGCAAGTCCATCTACGAGAAGGAGATGATGGCTTTGGTGTTAGCGATACAACATTGGAGACCTTATCTGGTGGGGCAGCGCTTTGTCGTTCATACGGACCAGAAGAGTCTTTGTCATCTGCTGGAACAGCGTATCACCACCCAAAACCAGCAGGACTGGATAGCTAAGCTTCTGGGATACGACTTTGAAATTGTTTATAAGACAGGAGCTGCGAATAAGGCTGCAGATGCTCTTTCAAGGCAGTTTGAAGGGGAAGATGAAGGGGAGAAGGAGCTGAGTGTAATAGCAAGGCCTTTTTGGCAAGATTTTGGAGAGATAATGCAGGAAGTAGAGGTGGATGAGTTTTTACAGAAGGTGATGAACGACGTAAGGAGAGATCCCAACACCCATCCCGCTTACACTTTAGAACATGAGAGGCTCCACCACAAAGGCAGATTGGTGTTGTCGGCTAAGTCCAAATGGATTCCAAAGTTGTTAGCCGAATTTCATGTGACACAAACGGGGGGCCACTCGGGAGTGTACAGGACTTACAGGCGTATTGCACAATCATTGTACTGGGTCGGGATGAAGAAGGATGTAACGGAGTTTGTGGCTAAGTGTCTTGTGTGCCAACAACACAAGTACTTAACATCTTCTCCTCAAGGATTACTACAGCCCTTGCCCGTGCCGAATGCCATATGGGAGGAGTTGAGTATGGACTTTATAGTTCGCTTGCCTAAGTCCCAGGGGTTTGACGCAATATTGGTGGTGGTGGATCGCTTGAGCAAATACGCACACTTCTTACCACTCAAGCACCCATATTCGGCGAAAACAGTGGCTGAGATTTTCATAAGGGAAATTGTGAGGTTGCATGGGATACCACAATCTATAGTATCTGACCGGGATCCGTTGTTCCTAAGTATATTTTGGAAGGAACTGTTTAAAGGGCAGGGTACGCAGCTAAAGATGAGTACCGCCTACCACCCTGAGACGGACGGTCAAACGGAGGTGCTAAATCGTGTTTTGGAGGGGTACCTTAGGTGTTTCTGTTCGAAGCAGCCAAAGGGGTGGATGACCTACAACACAAGCTACCAAGGAGCAATAAGGTACACCCCATTTGAAGCCGTGTATGGGAGGGCACCTCCCTCCTTGCATAGGTTCATTCCTGGAGAATCTTTGGTGGAGGCAGTGAGTCAGGAGCTCCTAACCAGGGATGAAGCCCTGAAACAATTAAAGTTTCATCTGGAAAGGGCGCAGGATCTTATGGTACGACAAGCTAATAAAAAAAGAAAGGCTGCTAACGTGGAAGTGGGGGATTGGGTGTACCTGAAGATACGACCTCATAGACAAACATCAATGCAAACCAGGCTCCATCCAAAGCTAGCAGCTAGATACTTTGGACCGTTTCTGGTGGTTCAGAAGGTGGGGGAGAATGCATGTAAGTTGCAGCTACCGGAGACAGTGAGAATTCATCCTGTCTTCCATGTTTCACAAGTGAAGAAGGCAATAGGAGAAAAAAGGGTCGAGAGGGACTTACCTCAGGACCTGCAGGCTGAAGGACCCTCATTCTGGCCCGTAAGCATTTTGGGAAGAAGGCAGCTGCAGGAAGGAGGGGAAAGTGTACCACAACTGCTAGTTGAGTGGCAAGAAGGAGGACAAGAAGGGGCTACCTGGGAGAATGAAATCACGATACGGGAACAATATCCCGATTTCAACCTTGGGGACAAGGTTGGAGTTCAAGGAGCGGGTATTGATAGGGATAATAGGAGATGGTTGAACAGGATCATACCTGTGAGGAAGGTTAAGCTTCCGCATTCGTTCTTGCATAGAGATTCTACTCTTGAGTTCTGGAAATTAGGTTCCCAATCTAGGAACCTAACAATTTCTCTTGCAGGTTTTGTGAAGATTTTTTCCAGCCTTTGCAAGGGTCTTCCTCGTTTCAAACTTTGCCTGAAGGGAACAATATCAGAGTTTTTAGATGGTATGGATTTGTTAGTTGTACATGGTCTTGTATCTTTTCTTAATGGTACCAGTATTTTTGGAAATTATGACTCGGAGCTAAAAAAGGCACTTCAGATTCCAAGGACAAGTAATTGTACTCATAAGGAACCCGTTGAAGGAAGTGATCAAAGCGAAAATAGAGTAATCAGAAGAGAAATTCATCGTCGCTGTGATGGAGGCCAAACCCCCAAAGTAGCTAAGCAGGACAAAAAGAAGAAGCCACGTGGACGCGCCCACAAGAGGATGCAATACAATCGCCGATTCGTCACCGCCGGGGTTTTGGTTTATGTTGTTGTAGTGGTGGGATTTGGCAAGAAGAGGGGTCCCAACTCGTCTGAGAAATGTCATATTGCTAGAAGTGGAAACTGGGGAACTTACGTTGGTGTCAAGGTTAGGTTTCTCTTATGGGTTATGTCAAACGAGGTGTGGTTTCTCAGATGTGGGAGGTGA 5199 0.4962 MEGRMVVVEGHLEAVEVAIAETKADTGALRQETAAIRQDVQAILKALGERNPNHHGKRQGESESSVNDNGGGPKGEGGRSGDGNQGGLSQWRKRVELPVFEGGEPWVWIGRAEKFFEVQKVAEEEKLELAFISMDGYVGSWFRFWREKTKNLSWDGLKRALGIRFGVGTRGTVYERLSTIRQSGPVEEYIRDFEVLVGQTTQIPEKQIMGYFLSGLREEVGDHVWPHDPPDLMTAMRVARDVEKLCTKTGGGWLSKNQSSWGKASGSVTRVEPNRETTVRVGTAESVGSVNKDATQGRNKGVATSSGGDRNVRNLPYSEYLKRREEGRCFRCGGPFGPGHRCPERGLKMLIVVEEEEEAEGDEVKETNLAKMELSALSAGGLTTPKTMKLRGHIGHREVLVLIDSGASHNFIDRRVVEELQMTVTKTQPYMVSLGDGQKKRISGCCEGVKLELGEAQLIERFYLFELGGVEIILGVEWLQRLGEVMVDWGKLKMMYKEGGREVTVRGDPTLERKVVGPRVLMKMDRTETCYVVWELGSMEAQQNRLKNVGLTEKQKREMESLLENYDVVFSEAKTLPPNRAVEHHIQLKEGVDPVNVRPYRYPHAIKAEIEHQIAEMLRTGVIRPSHSPYSSPVILVKKKDDSWRFCIDYRALNRATVPDKFPIPVIEELLDELNGASYFSKVDLKAGYHQIRMSERDVEKTAFRTHQGHYEFVVMPFGLTNAPATFQSAMNALFQPYLRRYVLVFFDDILVYSRTWEEHLEHVKCVLTILQRDQWVANKGKCEFGQTQVKYLGHIVSSRGVEMDDEKIKAVVEWERPKTVKSLRGFLGLTGYYRRFVRDYGKIARPLTELLKKGGFSWNEKAEEAWVNLKKKMTTAPVLSLPDFTQPFHIECDASGSGVGAVLMQGRNPIAYFSKALSEGKLSKSIYEKEMMALVLAIQHWRPYLVGQRFVVHTDQKSLCHLLEQRITTQNQQDWIAKLLGYDFEIVYKTGAANKAADALSRQFEGEDEGEKELSVIARPFWQDFGEIMQEVEVDEFLQKVMNDVRRDPNTHPAYTLEHERLHHKGRLVLSAKSKWIPKLLAEFHVTQTGGHSGVYRTYRRIAQSLYWVGMKKDVTEFVAKCLVCQQHKYLTSSPQGLLQPLPVPNAIWEELSMDFIVRLPKSQGFDAILVVVDRLSKYAHFLPLKHPYSAKTVAEIFIREIVRLHGIPQSIVSDRDPLFLSIFWKELFKGQGTQLKMSTAYHPETDGQTEVLNRVLEGYLRCFCSKQPKGWMTYNTSYQGAIRYTPFEAVYGRAPPSLHRFIPGESLVEAVSQELLTRDEALKQLKFHLERAQDLMVRQANKKRKAANVEVGDWVYLKIRPHRQTSMQTRLHPKLAARYFGPFLVVQKVGENACKLQLPETVRIHPVFHVSQVKKAIGEKRVERDLPQDLQAEGPSFWPVSILGRRQLQEGGESVPQLLVEWQEGGQEGATWENEITIREQYPDFNLGDKVGVQGAGIDRDNRRWLNRIIPVRKVKLPHSFLHRDSTLEFWKLGSQSRNLTISLAGFVKIFSSLCKGLPRFKLCLKGTISEFLDGMDLLVVHGLVSFLNGTSIFGNYDSELKKALQIPRTSNCTHKEPVEGSDQSENRVIRREIHRRCDGGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGVLVYVVVVVGFGKKRGPNSSEKCHIARSGNWGTYVGVKVRFLLWVMSNEVWFLRCGR 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02567 1732 MobiDBLite consensus disorder prediction 48 88 - -
Vimu7g02567 1732 Pfam Retroviral aspartyl protease 400 482 - -
Vimu7g02567 1732 SUPERFAMILY Chromo domain-like 1404 1483 IPR016197 -
Vimu7g02567 1732 Gene3D - 1140 1334 IPR036397 GO:0003676
Vimu7g02567 1732 Gene3D - 888 954 - -
Vimu7g02567 1732 FunFam Retrovirus-related Pol polyprotein from transposon gypsy-like Protein 1056 1129 - -
Vimu7g02567 1732 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 582 722 - -
Vimu7g02567 1732 MobiDBLite consensus disorder prediction 1642 1664 - -
Vimu7g02567 1732 SUPERFAMILY Ribonuclease H-like 1142 1291 IPR012337 -
Vimu7g02567 1732 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 618 797 IPR000477 -
Vimu7g02567 1732 CDD retropepsin_like 390 480 - -
Vimu7g02567 1732 SUPERFAMILY DNA/RNA polymerases 563 990 IPR043502 -
Vimu7g02567 1732 Gene3D Acid Proteases 378 503 IPR021109 -
Vimu7g02567 1732 Pfam RNase H-like domain found in reverse transcriptase 859 953 IPR041577 -
Vimu7g02567 1732 ProSiteProfiles Integrase catalytic domain profile. 1140 1313 IPR001584 GO:0015074
Vimu7g02567 1732 Gene3D - 806 887 IPR043128 -
Vimu7g02567 1732 Gene3D - 662 797 IPR043128 -
Vimu7g02567 1732 Pfam Ribosomal protein S30 1643 1694 IPR006846 GO:0003735|GO:0005840|GO:0006412
Vimu7g02567 1732 Gene3D - 1040 1130 - -
Vimu7g02567 1732 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 637 796 IPR000477 -
Vimu7g02567 1732 FunFam Transposon Tf2-6 polyprotein-like Protein 807 895 - -
Vimu7g02567 1732 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 690 722 - -
Vimu7g02567 1732 CDD RNase_HI_RT_Ty3 890 1003 - -
Vimu7g02567 1732 CDD RT_LTR 621 797 - -
Vimu7g02567 1732 Pfam Integrase zinc binding domain 1076 1130 IPR041588 -
Vimu7g02567 1732 SUPERFAMILY Acid proteases 387 485 IPR021109 -
Vimu7g02567 1732 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 1099 1297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02567 Vimu-Chr7 21775064 21784282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02567 1643 1697 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 81.818 6.08e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02567 - - var:108344576 1971.82