Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02563 TTGCTCTCTCTGTTTCTTCTCGCTTTTTGCTTCCATACAAATATAAAATCACTTGTCTCCGCCGTTTCTTCGACATTCTCTTTCTCTTCGCGTTCGTTCGATGCTACAGTCTGCTATCTAATGGTGTCACTGCAAGTAGTGCTCGTGGTTTTCACCTCTATATTCCATGCAACAACAGTGACGTCTACACCCCACCACGACCTTATCGTCAAGACATTCTCTTCCGCCAACTTCTCCAAGAACCAGCCCTGGGTCGGACCCATCGGCCACCGTCGAATCACGGTTGATCTTAACGGCGGTGGCCACTACCGGTCCGTTCAAGACGCCGTCAATGCCGTCCCAGACAACAACAGAAGGAATATCCTCATCAAAATCAACGCCGGATGCTACAAAGAAAAGGTGGTGGTGCCCGTGACGAAGCCGTACATAACGTTTGAGGGTGCAGGTAGAGAAGTGACGGTGATAGAATGGCATGATCGAGCCAGTGACCCTGGTCCCAGTGGACAGCAGCTTCGTACTTACAGAACCGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCCAGAAACATCAGCTTCAAGAACACAGCGCCTGCACCAATGCCGGGGATGCAGGGATGGCAAGCGGTGGCGTTTCGCATATCCGGCGATAAGGCATACTTCTCCGGCTGCGGATTCTACGGCGCACAAGACACACTTTGTGACGATGCTGGCAGACATTACTTCAAGGAATGCTACATTGAAGGATCCATCGATTTCATTTTTGGCAATGGCAGGTCCATGTACAAGGTACTACCAATTTTTATTTTATATTCAGGGTCTGTGTATATTTCTCAAGAGAAAGAGAATCTAAGGAAAGAGAGATACAAAACACAAAGATAA 882 0.4796 MLSLFLLAFCFHTNIKSLVSAVSSTFSFSSRSFDATVCYLMVSLQVVLVVFTSIFHATTVTSTPHHDLIVKTFSSANFSKNQPWVGPIGHRRITVDLNGGGHYRSVQDAVNAVPDNNRRNILIKINAGCYKEKVVVPVTKPYITFEGAGREVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKVLPIFILYSGSVYISQEKENLRKERYKTQR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02563 293 Pfam Pectinesterase 93 265 IPR000070 GO:0030599|GO:0042545
Vimu7g02563 293 Gene3D - 52 289 IPR012334 -
Vimu7g02563 293 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 85 269 - -
Vimu7g02563 293 SUPERFAMILY Pectin lyase-like 90 277 IPR011050 -
Vimu7g02563 293 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02563 Vimu-Chr7 21740306 21741593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02563 81 263 Carbohydrate Esterase AT5G47500 79.781 5.94e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02563 - - gmx:100816190 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02563 7 21740306 21741593 Vimu7g02563 7 21740306 21741593 ECH
Vimu7g02563 7 21740306 21741593 Vimu7g02563 7 21740306 21741593 PCT