Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02558 ATGGCGGAGCAGAACGAATCACAAGACAACAGAGAACTCTACGCACTTCTCAACTTGTCTCCGGATGCTTCCGATGAAGAAATCCGCAGAGCGTATCGTCAATGGGCGCAAGCTTATCACCCCGATAAGTACCAAGCTCCTCACATGAAGGATATTGCCACGGAGAACTTTCAGCGCATATGTGAAGCGTATGAGATTCTGTCAGATCCACATAAGAGACAAATATATGATATATATGGAATGGAAGGTTTGACTTCTGGTTTGGAGCTTGGTCCAACGCTCAATGGAGCTGAAGTGATAAAGGCAGAGCTAGAGAGATTAAAGAGGATGAAGGAAAGGGAAAAATTGGCGGCACATTTTCTACCTTCTGGTACAATTATAGCCAATTTGTCTTTGCCGCGCTATTTAGACGGTGATGGCCTCCTAGTAGGCATCAGAATGGCTATGACAAGTCAAATCCAGTCTCATTTATCCAAGCGCAATGCTTTTACAATTGGTGGTAATTTAGCAGTGAACGGAGGTGAAGGCGGTGGAGCTGCGAATGCTCTATTTAGGCATCAACTTTCAAAAGATTCGTCAGTGGAGTTTGTGGCTTCAGTTGGTTTGCGTGCACTAATTGGCGTGCAAACAACTCGTAATTTGTCATCACACTCAACAGCAACAATGGGCGTAGCAATGTCTTTGAGAGATGGTTCATTGAATCTTTCAAATTTGTGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTAATCTGGGACAGCAATCATCTATAGCTGTTGGGTGGCAAAAGAAAGATGAGAGAAGGTCTGCCTCCGGAGAATTAAAGTTTGGCACAGGTTTGTTTGAAGCAGCAGTTCATTGTACACATCGTTTTTCTCGTAAATCACTTGGTTGCATTGCGGGAAGAGTTGGGAGTTCTTCACTCGAGATTGAAGTTGGTGGTGGTAGGAAGTTATCCAAGTTCAGCTCAGTACGGTGGTTGTATGTAATAGGAATTCAGGGTATTTCCTGGAAATTTGAACTCTATCGTGGGGGTCAGAAGATAATTCTTCCAATTTTGCTGACAAGGCATCTTAACCCTGTGTTTGCTGCTGGAGCATTTTTCATTCCTGCATCTCTTTACTTTGGTCTAAAGAAGTTTCTTATTAAACCTTATTACCTTAGAAGGAGTAAGCAGAAGGCTCTGGAGGAGGAGAAGGAAAGTTCTGCTCAGGTTAAGGAAGCAAGGGCTGCAGCAGAGAAAGCTCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTACGAGAGCTCTATATGGAAATCAGATAGTTTTGAGCAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATCAACTTCTGATGTCATTGATGTTACGATACCTCTGAATTTTCTTGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTGAAAAAATCAGGCATTATGGGTTTTTGTGATCCATGTCCAGGAAGACCTAAAGAGTTGTATGTAGAGTACGTTTATACTGGCAATCAATTCAAGGTCTAG 1578 0.4221 MAEQNESQDNRELYALLNLSPDASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRICEAYEILSDPHKRQIYDIYGMEGLTSGLELGPTLNGAEVIKAELERLKRMKEREKLAAHFLPSGTIIANLSLPRYLDGDGLLVGIRMAMTSQIQSHLSKRNAFTIGGNLAVNGGEGGGAANALFRHQLSKDSSVEFVASVGLRALIGVQTTRNLSSHSTATMGVAMSLRDGSLNLSNLWTRQLSETASGHIELNLGQQSSIAVGWQKKDERRSASGELKFGTGLFEAAVHCTHRFSRKSLGCIAGRVGSSSLEIEVGGGRKLSKFSSVRWLYVIGIQGISWKFELYRGGQKIILPILLTRHLNPVFAAGAFFIPASLYFGLKKFLIKPYYLRRSKQKALEEEKESSAQVKEARAAAEKAQKLQQNVANRKRNKQLETGGLVITRALYGNQIVLSNLKSSSETSFESTSDVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGRPKELYVEYVYTGNQFKV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02558 525 Coils Coil 94 117 - -
Vimu7g02558 525 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vimu7g02558 525 Gene3D DnaJ domain 1 90 IPR036869 -
Vimu7g02558 525 PANTHER CHAPERONE PROTEIN DNAJ 13 1 525 IPR042162 -
Vimu7g02558 525 SUPERFAMILY Chaperone J-domain 9 92 IPR036869 -
Vimu7g02558 525 Coils Coil 395 432 - -
Vimu7g02558 525 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Vimu7g02558 525 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vimu7g02558 525 PRINTS DnaJ domain signature 72 91 IPR001623 -
Vimu7g02558 525 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vimu7g02558 525 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vimu7g02558 525 CDD DnaJ 12 69 IPR001623 -
Vimu7g02558 525 Pfam DnaJ-like protein C11, C-terminal 388 525 IPR024586 -
Vimu7g02558 525 SMART dnaj_3 11 72 IPR001623 -
Vimu7g02558 525 Pfam DnaJ domain 13 77 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02558 Vimu-Chr7 21710894 21720171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02558 14 79 C2H2 Transcription Factor Family AT1G74250 42.647 1.00e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02558 K09531 - gmx:100817782 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02558 7 21710894 21720171 Vimu7g02558 7 21710894 21720171 ECH