Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02556 ATGCCTCCTCCTCTGTTTCTCCTCTGTTTCATGCTCTGCATTTCCCACACACACCAAATCATTATCGACTACACCCTTTCCTTCAATTTAGCTTCAAACCCTTCTCAATCCATAACCCTTTACATGGACACGGGCAGCGACCTTGTCTGGTTCCCATGCACTCCCTTCCAGTGCATTCTCTGCGAAGGCAAATTCAACGCTACAACACCCCTCAACGTCACGCGCTCCCACCGTGTCTCCTGCCAATCCCCTGCATGCTCCGCAGCACACTCCTCTATGTCTTCCCATGACCTCTGCGCAATCGCACGTTGTCCTCTCGACAGTATCGAAACCTCTGATTGCTCTTCTGCCACCTGTCCACCTTTCTACTACGCTTACGGAGATGGAAGCTTCATCGCGCGCCTCTACCGCGATTCTCTATCCATGTCCTCTCTTTTCCTTAAAAACTTCACCTTCGGTTGCGCCCACACCGCACTCGCCGAACCCACCGGCGTTGCAGGTTTCGGTCGGGGCTTGTTGTCACTCCCTGCGCAACTTGCTACCCTCTCTCCGAACCTCGGTAACCGTTTTTCTTACTGTCTGGTTTCTCACTCTTTCGATCAACAACGAGTTCGCAAACCGAGTCCACTCATTCTCGGCCGCTACGACGATTCCGCAGAGGGTAGTGAGTTTGTTTACACGTCCATGCTTCGGAACCCGAAGCATCCTTATTTCTACTGCGTAGGACTCGCCGGAATCTCCGTCGGGAAGAGGACTATTCCGGCGCCGGAGATGCTGCGAAGGGTGAACCGCAGAGGGGACGGCGGCGTGGTTGTTGACAGCGGAACCACGTTCACAATGCTGCCTGCGAGTTTGTATAACTCGGTGGTGAGTGAGTTTGACCGGCGCGTGGGGCGAGTTCAGAAACGCGCGAGTAAGGTGGAGGAGAAAACGGGCCTCGGGCCGTGTTATTTTTTGGAAGGGTTGGTGGAGGTGCCTACGGTGACGTGGCACTTTGTGGGGAATGATTCATATGTGGTGCTGCCTAGGGGAAACTATTTTTATGAGTTTTTAGACGGTGGTGATGGGGTTAGGAGGAAGGTGGGGTGCTTGATGTTGATGAACGGTGGTGATGACAGTGAGTTGAGCGGTGGACCCGGAGCCACACTTGGGAACTATCAGCAGCAAGGGTTTGAGGTGGTGTATGACTTGGAAAACCAGCGCGTGGGTTTCGCTAAGAGGCAATGCGCTTCGCTTTGGGATAGTCTCAACCGTCACAAAAGCTAG 1266 0.5363 MPPPLFLLCFMLCISHTHQIIIDYTLSFNLASNPSQSITLYMDTGSDLVWFPCTPFQCILCEGKFNATTPLNVTRSHRVSCQSPACSAAHSSMSSHDLCAIARCPLDSIETSDCSSATCPPFYYAYGDGSFIARLYRDSLSMSSLFLKNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPNLGNRFSYCLVSHSFDQQRVRKPSPLILGRYDDSAEGSEFVYTSMLRNPKHPYFYCVGLAGISVGKRTIPAPEMLRRVNRRGDGGVVVDSGTTFTMLPASLYNSVVSEFDRRVGRVQKRASKVEEKTGLGPCYFLEGLVEVPTVTWHFVGNDSYVVLPRGNYFYEFLDGGDGVRRKVGCLMLMNGGDDSELSGGPGATLGNYQQQGFEVVYDLENQRVGFAKRQCASLWDSLNRHKS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02556 421 ProSiteProfiles Peptidase family A1 domain profile. 24 405 IPR033121 -
Vimu7g02556 421 Gene3D Acid Proteases 214 415 IPR021109 -
Vimu7g02556 421 FunFam Probable aspartyl protease At4g16563 14 212 - -
Vimu7g02556 421 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 270 281 IPR001969 GO:0004190|GO:0006508
Vimu7g02556 421 Gene3D Acid Proteases 12 213 IPR021109 -
Vimu7g02556 421 PANTHER OS07G0603500 PROTEIN-RELATED 23 409 - -
Vimu7g02556 421 CDD pepsin_A_like_plant 24 409 IPR034161 -
Vimu7g02556 421 Pfam Xylanase inhibitor C-terminal 239 405 IPR032799 -
Vimu7g02556 421 Pfam Xylanase inhibitor N-terminal 32 213 IPR032861 -
Vimu7g02556 421 FunFam aspartic proteinase nepenthesin-1 214 414 - -
Vimu7g02556 421 SUPERFAMILY Acid proteases 33 414 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02556 Vimu-Chr7 21700626 21702035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02556 24 412 Miscellaneous Gene Families AT1G44130 22.604 1.36e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02556 - - gmx:100807884 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02556 7 21700626 21702035 Vimu7g02556 7 21700626 21702035 ECH
Vimu7g02556 7 21700626 21702035 Vimu10g01622 10 19915248 19917806 ECH
Vimu7g02556 7 21700626 21702035 Vimu7g02556 7 21700626 21702035 PCT