Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02535 CACGATCGCTTGGTGGTGGGTGGAGATAGAGGTTTACATCTCTCTCGCCGTTTTATCGCCACCTTTTATGAACTCAAAGCTTTTCCGTTTTCCTCCCTCAAATGCAGATCAACAGCTGATATGAACACGTTTTCACATGTTCCTCCTGGATTTCGTTTCCATCCCACAGATGAAGAACTTGTTCATCACTACCTTAAGAAAAAAGTAGCTTCTAAAAGGATTGACCCAGAAGTGATAAAAGACATTGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAGATTGGAAGTGATGAACAAGACGAATGGTATTTTTTTAGTCATAAGGATAAGAAATACCCAACAGGAACTCGTACTAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAGGCAATTTACTGTAAACATTGTCTTACTGGAATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCACCCAATGGACAAAAATCTGACTGGATCATGCATGAGTATCGGCTACAAACTATTGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGTGATTACGTGTCGCCATGTTGGTATGATGACCAAGTCTCGTTCATGCAAGAACTGGAATCTCCAATGCCAATATCTAACCCTAATGCACCAAATCGTCACCCCTACCTCAGCAAGGAATTGCAATTCAATATTGCCAATGACGCTTTCCTCCAACTTCCACAACTCCAAAGTCCCGTGATTGTTCAATCTGCGGCTAGTTTGAGTTTTAGCCCGGTTGTCTCTTACGGCTATGGTAGCAAGAACAATGGAAACGCTTTGCAGTCTTCATCACTCACTCAAGAACAACGACAGTTTCATTATGCTAGTAATGATCGATCTATGGACCATTCTATGGATTGGCGAGTACTTGACCAGTTTGTGGGTAATCAGCTGAGTCACGATGAACATTTTTCCAATGTGGCTCACCAGATGAAGTTGCCGGCAGACGGATCTACAAAAAGTGCTTCAACTTCCATCTCCGGTTCCCAGATTGACCTCTGGAAATGA 1101 0.4205 HDRLVVGGDRGLHLSRRFIATFYELKAFPFSSLKCRSTADMNTFSHVPPGFRFHPTDEELVHHYLKKKVASKRIDPEVIKDIDLYKIEPWDLQELCKIGSDEQDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYCKHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLQTIENGTPQEEGWVVCRVFKKRMTTVRKMGDYVSPCWYDDQVSFMQELESPMPISNPNAPNRHPYLSKELQFNIANDAFLQLPQLQSPVIVQSAASLSFSPVVSYGYGSKNNGNALQSSSLTQEQRQFHYASNDRSMDHSMDWRVLDQFVGNQLSHDEHFSNVAHQMKLPADGSTKSASTSISGSQIDLWK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02535 366 ProSiteProfiles NAC domain profile. 47 196 IPR003441 GO:0003677|GO:0006355
Vimu7g02535 366 MobiDBLite consensus disorder prediction 347 366 - -
Vimu7g02535 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 46 295 - -
Vimu7g02535 366 MobiDBLite consensus disorder prediction 345 366 - -
Vimu7g02535 366 Pfam No apical meristem (NAM) protein 48 175 IPR003441 GO:0003677|GO:0006355
Vimu7g02535 366 Gene3D NAC domain 56 200 IPR036093 GO:0003677|GO:0006355
Vimu7g02535 366 FunFam NAC domain-containing protein 56 200 - -
Vimu7g02535 366 SUPERFAMILY NAC domain 42 196 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02535 Vimu-Chr7 21558004 21561077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02535 41 366 NAC Transcription Factor Family AT1G12260 56.461 1.16e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g02535 NAM 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02535 - - gmx:100779370 483.796