Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02534 ATGGTAGAAGATTCCAGAAGAAGCGCACTCGCATCCCAGAAGTCTCTAGTCTCTCTCAGGCGCTTTACATCTCATATAAGCCCTTCCCCACTCTCGACACAACCAATTTCATTCCTTTTTTTAACCCAAACCAACCTTACTCCTATGGCCGACGACGCCAAAGCCAAGGGCAACGCCGCCTTCGCCGCCAAGGACTACGCCACCGCTATTCGCCACTTCTCCGACGCCATCGCCTTGGCCCCCGACAACCACGTCCTCTATTCCAACCGATCCGCCGCGTACGCGTCCCTTAAAAACTACTCCGATGCCCTAATCGATGCCAAGAAGACCGTCGAACTCAAGCCTGACTGGTCCAAGGGCTACAGTCGTCTCGGCGCCGCGCATCTCGGCCTCTCCCAATATGAAGACGCACTTTCGGCTTACAAGAAGGGCCTCGAATTCGACCCCAACAACGAGCCCCTCAGGGCCGGTCTTGCCGATGCGCAGAAGGCTCTAGCTGAGGCCTCCAGACCCCGCTCCTCCGCCGCCAGCCCCTTCGGCGATGCATTCTCAGGGCCCGAGATGTGGACCCGGCTCACCGCGGACCCCTCAACCAGGGCTTACCTCCAACAGCCGGATTTCGTGAAGATGATGCAGGATATCCAGAGAGATCCTAACAAACTAAACCTGCATTTGAATGACAAGAGAGTCATGCAAGCCATAGGGGTTTTGCTCAACGTCAAGATTCAAACCGCTCCCCCCGGCGACGCTGACATACCTGATTCGCCCTCTGCGTCCCCGTCCCCGTCCGAGAGGAAGAGAGCCGCGGAAGCTGAACCCTCCAAGCAGCCCGAACCTGAACCCGAACCCGAGCCCATGGATTTGTCTGAGGAGGACAAGAGCGCGAAGCAGAGGAAGGCTGAGGCTCTGAAAGAAAAGGAAGCGGGAAATGCAGCGTATAAGAAGAAGGATTTTGATACTGCAATTCAACATTACACCAATGCTTTGGAGTTGGATGATGAAGATATATCGTATCTCACCAACCGCGCTGCTGTATACTTGGAAATGGGAAAGTATGAGGACTGTATAAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAGCTAAGATCAGATTTTAAAATGATAGCCAGAGCTTTGACAAGGAAAGGAACTGCCTTGGTGAAAATGGCGAAGTGCTCAAAGGATTACGACCCTGCCATTGAAACATTCCAGAAAGCACTAACTGAGCATCGCAACCCTGACACTTTGAAGAAACTTAATGAAGCTGAGAAGGCAAAAAAAGATCTGGAACAACAAGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTTAAGCAGCAGAAGTATCCCGAGGCTGTGAAGCATTACTCAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCCTATAGTAACAGAGCAGCATGCTATACTAAGTTGGCGGCATTGCCTGAAGGTTTAAAGGATGCAGAGAAATGTATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAGGGTGCGGTGCAGTATTTCATGAAGGAGTATGACAAAGCTTTGGAAACATATAGGGAGGGATTGAAATATGACGCTAACAACCAGGAGTTGCTTGAAGGAATTAGAACTTGTATACAACAAATTAATAAGGCTAGCCGTGGAGACTTAAGTCCCGAGGAATTGAAGGAGAGACAGGCAAAGGCAATGCAGGATCCAGAAATTCAGAGCATTCTCCAAGACCCTGTTATGAGACAGGTGTTGGTTGATTTCCAGGAAAATCCCAAGGCTGCACAGGAACATACGAAGAATCCTATGGTGATGAATAAGATCCAAAAGCTGGTCAGCGCCGGAATTGTTCAGATGAGGTAA 1893 0.4945 MVEDSRRSALASQKSLVSLRRFTSHISPSPLSTQPISFLFLTQTNLTPMADDAKAKGNAAFAAKDYATAIRHFSDAIALAPDNHVLYSNRSAAYASLKNYSDALIDAKKTVELKPDWSKGYSRLGAAHLGLSQYEDALSAYKKGLEFDPNNEPLRAGLADAQKALAEASRPRSSAASPFGDAFSGPEMWTRLTADPSTRAYLQQPDFVKMMQDIQRDPNKLNLHLNDKRVMQAIGVLLNVKIQTAPPGDADIPDSPSASPSPSERKRAAEAEPSKQPEPEPEPEPMDLSEEDKSAKQRKAEALKEKEAGNAAYKKKDFDTAIQHYTNALELDDEDISYLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYDPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKHYSESIRRNPKDPRAYSNRAACYTKLAALPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYDKALETYREGLKYDANNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQSILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02534 630 FunFam hsp70-Hsp90 organizing protein 3-like 440 554 - -
Vimu7g02534 630 Gene3D Tetratricopeptide repeat domain 49 164 IPR011990 GO:0005515
Vimu7g02534 630 ProSiteProfiles TPR repeat profile. 509 542 IPR019734 GO:0005515
Vimu7g02534 630 MobiDBLite consensus disorder prediction 265 308 - -
Vimu7g02534 630 FunFam Putative stress-induced-phosphoprotein 1 175 243 - -
Vimu7g02534 630 Gene3D Tetratricopeptide repeat domain 299 435 IPR011990 GO:0005515
Vimu7g02534 630 Pfam Tetratricopeptide repeat 510 542 IPR019734 GO:0005515
Vimu7g02534 630 Coils Coil 413 433 - -
Vimu7g02534 630 Gene3D - 176 243 - -
Vimu7g02534 630 ProSiteProfiles TPR repeat profile. 441 474 IPR019734 GO:0005515
Vimu7g02534 630 Gene3D Tetratricopeptide repeat domain 440 560 IPR011990 GO:0005515
Vimu7g02534 630 Pfam Tetratricopeptide repeat 119 151 IPR001440 GO:0005515
Vimu7g02534 630 Coils Coil 286 306 - -
Vimu7g02534 630 PANTHER TPR REPEAT CONTAINING PROTEIN 45 602 - -
Vimu7g02534 630 Pfam Tetratricopeptide repeat 55 107 - -
Vimu7g02534 630 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 562 630 - -
Vimu7g02534 630 SMART tpr_5 377 414 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 118 151 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 84 117 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 50 83 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 509 542 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 336 369 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 475 508 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 302 335 IPR019734 GO:0005515
Vimu7g02534 630 SMART tpr_5 441 474 IPR019734 GO:0005515
Vimu7g02534 630 MobiDBLite consensus disorder prediction 245 308 - -
Vimu7g02534 630 ProSiteProfiles TPR repeat region circular profile. 118 151 - -
Vimu7g02534 630 ProSiteProfiles TPR repeat profile. 302 335 IPR019734 GO:0005515
Vimu7g02534 630 Pfam TPR repeat 309 350 - -
Vimu7g02534 630 Pfam TPR repeat 448 487 - -
Vimu7g02534 630 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Vimu7g02534 630 FunFam Stress-induced phosphoprotein 1 299 433 - -
Vimu7g02534 630 MobiDBLite consensus disorder prediction 165 187 - -
Vimu7g02534 630 Pfam STI1 domain 571 622 IPR041243 -
Vimu7g02534 630 Pfam STI1 domain 186 239 IPR041243 -
Vimu7g02534 630 SUPERFAMILY TPR-like 56 554 IPR011990 GO:0005515
Vimu7g02534 630 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Vimu7g02534 630 SMART CBM 185 224 IPR006636 -
Vimu7g02534 630 SMART CBM 579 618 IPR006636 -
Vimu7g02534 630 FunFam Stress-induced phosphoprotein 1 48 164 - -
Vimu7g02534 630 Gene3D - 561 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02534 Vimu-Chr7 21552584 21555893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02534 440 536 U-box Gene Family AT3G07370 27.835 1.67e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02534 K09553 - gmx:100816776 974.541