Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02530 TTGGCTAGTTTGAAGGTTTGTATAGCAAGTGCTATGGGGAGGCAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAGCTCATAAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGTCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTGAGGCCTGACTTGAAGAGAGGCCTCCTCACACAGGCAGAAGAACAGCTTGTCATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAGAATCACTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAAACTCTCAACAAAGAAGCCACATCACAGAATAGTTCTTCCCCTGCCGAGCATCTGTCACAGGTTGATAATATTAATATCCATCAGGTTAAGGAAAATGGTGTGGCTATCAACTCGGAAGAGAATTCCACTTCATCACCAGCTGAAAATTCTTCGGGGGAAGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTGATGAACAGCATGTGGCTGGATGAAACTCCTCTTATGGACACGTTATGGGACACTACACCTAAATTAGAGAATGGAAACTTGCCAATGTGGGAGGACAATTGTTCTTGGTTGTTGGACTGCCAGGATTTTGGAATTCATGATTTTGATTTTAATTGTTCCAGCGAGATTGAATCAAATGCACTGCAAACTCTAGACCTGGCCAGAAAAGAACTTTAG 831 0.4452 MASLKVCIASAMGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHETLNKEATSQNSSSPAEHLSQVDNINIHQVKENGVAINSEENSTSSPAENSSGEESLLMDSICSDVSLMNSMWLDETPLMDTLWDTTPKLENGNLPMWEDNCSWLLDCQDFGIHDFDFNCSSEIESNALQTLDLARKEL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02530 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Vimu7g02530 276 FunFam MYB transcription factor 81 157 - -
Vimu7g02530 276 FunFam MYB transcription factor 22 78 - -
Vimu7g02530 276 Gene3D - 81 158 - -
Vimu7g02530 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Vimu7g02530 276 Pfam Myb-like DNA-binding domain 82 122 IPR001005 -
Vimu7g02530 276 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Vimu7g02530 276 CDD SANT 27 72 IPR001005 -
Vimu7g02530 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 194 - -
Vimu7g02530 276 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vimu7g02530 276 Gene3D - 23 78 - -
Vimu7g02530 276 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vimu7g02530 276 SMART sant 24 74 IPR001005 -
Vimu7g02530 276 SMART sant 77 125 IPR001005 -
Vimu7g02530 276 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Vimu7g02530 276 CDD SANT 82 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02530 Vimu-Chr7 21528134 21529675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02530 12 268 MYB Transcription Factor Family AT4G12350 56.738 7.40e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g02530 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02530 K09422 - gmx:100800360 489.96