Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02522 ATGGCTTCCAAATTAGCGTCGCCGATGACGGTTCAGGCAGGTCGGGTTCGGACCCTGAAAAACGGTTCCTGTGGAGAAGCGGGTTCGGGTCCCGTTGTGTACTGGATGTTCAGAGATCAACGGGTGAGAGACAACTGGGCTCTGATCCACGCCGTTGCTGAGGCCAACAAAGCCAACGTTCCTGTTGCCGTTGTTTTCAATCTATTCCACAGCTTTCTCGGCGCCAAGTCCCGTCACCTAGGGTTCATGCTCAGGGGCTTGCGCCAATTGTGCCACCGTATGCAAAATACTCTTCAAATTCCATTTTTCTTGTTCCAGGGAGAGGCGGAGGAGACCGTGCCAGCGTTTCTTAGAGAATGTGGAGCTTCACTTTTGGTAACGGATTTCTCACCATTGCGGGAAATTCGAAGGTGTAAAGAAGAGATTTGCAAGAGGGTAAGCGATTCGGTTACGGTGCATGAAGTGGACGCTCACAACGTTGTGCCACTTTGGGTTGCCTCTGATAAATTGGAGTACAGTGCTAAGACAATCAGGACAAAGATAAACAAAAGGCTTTCTGAGTATCTCATCGATTTCCCTGACGTTGAAGATAATCTACCAACTAGGATGTGGGTCCTTCCCGAGAACCATTCCATTGACTGGGATGGTCTCATTGCTGATGTGTTAAGGAGAGGAGCTGAGGTTCCTGAAGTTGATTGGTGTGAGCCGGGGGAAATTGCGGCAAGGGATGTGTTGATGGGAAGTGAAAATGGATTCTTGACAAAAAGGTTGAAAGGTTACTCTCTAGATCGCAACAACCCGTGCAACCCCAATGCACTTTCTGGTTTATCTCCCTATTTGCATTTTGGACAGATATCGGCTCAGCGATGTGCTTTTGAAGCACGTAAGCGGCGAAATTCACATCCTCAAGCAATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGATAACTATTGCTTCTACGAGCCCCACTATGATTCAATAAAAGGAGCATGGGGTTGGGCTCGGAACACCTTAACGGAACATGCCACTGATAAGCGTGAACATATTTACACGAGGGAACAATTGGAGAAGGCACAAACTTCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACAAGGGGAAAATGCACGGATTTATGCGAATGTATTGGGCAAAGAAGATACTTGAGTGGACACGAGGACCTGAAGAAGCCCTTGAGATATCTCTGTATTTAAATGACAAGTATGAATTAGATGGGCGAGATCCAAATGGTTATGTTGGCTGTATGTGGTCGATATGCGGGGTTCATGATCAGGGGTGGAAGGAGCGGCCCATTTTTGGGAAAATTCGTTACATGAACTATGCAGGCTGCAAAAGAAAATTTGATGTCGATAAATACATTGCATATGTCAATAAATTAGTTCGTGATCTTAAAAAGAGAAAGGCTGAAAACTTGCTATCTGAAAGGGAAAAAGTTCTTCGCAGTTGTGTTCCAGAAGATTGA 1506 0.4628 MASKLASPMTVQAGRVRTLKNGSCGEAGSGPVVYWMFRDQRVRDNWALIHAVAEANKANVPVAVVFNLFHSFLGAKSRHLGFMLRGLRQLCHRMQNTLQIPFFLFQGEAEETVPAFLRECGASLLVTDFSPLREIRRCKEEICKRVSDSVTVHEVDAHNVVPLWVASDKLEYSAKTIRTKINKRLSEYLIDFPDVEDNLPTRMWVLPENHSIDWDGLIADVLRRGAEVPEVDWCEPGEIAARDVLMGSENGFLTKRLKGYSLDRNNPCNPNALSGLSPYLHFGQISAQRCAFEARKRRNSHPQAIDAFLEELIVRRELADNYCFYEPHYDSIKGAWGWARNTLTEHATDKREHIYTREQLEKAQTSDPLWNASQLEMVHKGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRDLKKRKAENLLSEREKVLRSCVPED 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02522 501 NCBIfam deoxyribodipyrimidine photo-lyase 10 470 IPR008148 GO:0003904|GO:0006281
Vimu7g02522 501 FunFam Deoxyribodipyrimidine photolyase 332 479 - -
Vimu7g02522 501 Gene3D - 158 331 - -
Vimu7g02522 501 Gene3D HUPs 9 157 IPR014729 -
Vimu7g02522 501 Pfam DNA photolyase 32 193 IPR006050 -
Vimu7g02522 501 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 31 211 IPR036155 -
Vimu7g02522 501 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 5 492 - -
Vimu7g02522 501 FunFam Deoxyribodipyrimidine photolyase 10 157 - -
Vimu7g02522 501 ProSitePatterns DNA photolyases class 2 signature 2. 435 454 IPR032673 -
Vimu7g02522 501 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 332 482 - -
Vimu7g02522 501 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 224 469 IPR036134 -
Vimu7g02522 501 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 30 163 IPR006050 -
Vimu7g02522 501 FunFam Deoxyribodipyrimidine photolyase 158 331 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02522 K01669 - gmx:100170749 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02522 7 21473439 21476946 Vimu7g02522 7 21473439 21476946 ECH
Vimu7g02522 7 21473439 21476946 Vimu11g02094 11 34904359 34909137 PCT