Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02507 ATGAGAAGACACCGTGCTATTCATCTCTCTCATGCTCTACTGTGCACCTTTTTTTATTGTCTTGTGATAGCTTCTGCAGTGACTGAGAAGGAAATTTTGCTTGAATTCAAAGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCGAGTGGGAACCCGTGCAACGATTACAAAGGCGTTTCGTGTAACTCTGAAGGGTTTGTGGAGAGAATCGTGCTGTGGAACACTAGCTTGGGAGGGGTGTTATCCTCGTCACTTTCGGGGTTGAAGAGGTTGAGGATATTGACGTTGTTCGGAAACCGTCTCTCGGGTGGTATTCCAGAAGGGTATGGTGATCTTCACTCACTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCTATCCCCGAGTTCATTGGTGATTTGCCTAGCATTCGGTTTCTAGATTTATCCAAGAATGGCTTCACTGGGGAGATACCTTTGGCTTTGTTTCGGTACTGCTACAAAACAAGGTTCGTTTCTCTTTCTCATAACAACCTCGCCGGTTCAATTCCTGCCTCCTTGGTAAACTGCTTTAACCTTGAAGGGTTTGATTTCTCCTTCAACAACCTTAGTGGAGTTGTCCCTTCCGGGCTTTGTGGCATTCCAAGGTTGTCATATGTGTCGCTGAGAAACAATGCCTTGTCAGGGAGCGTGCAGGAACTCATTTCCTCATGCCAAAGTCTGGAACATTTGGATTTTGGAAGTAACAGGTTCACTGATTTGGCACCGTTCAGTGTCCTTGAAATGCAAAATCTTACCTATCTCAATTTATCGTACAATGGGTTTGGTGGACATATTCCTGAGATCAGTTCCTGTAGTGGGAGATTGCAAATCTTGGATGCTTCGGGGAATCTTTTAGATGGGGAGATTCCCACCAGCATAACAAAATGCAAGAGCCTAAAACTCTTGGCGTTGGAATTGAATAGGCTGGAGGGGAATATCCCAGTGGATATTCAGGAACTGCGGGGACTAATTGTTATCAAATTGGGTAATAATTTCATTGGTGGAATGATCCCCAAGGGCTTTGGCAGCGTCGAGCTTCTTGAATTGCTGGATTTGCACAATCTGAACCTCGTTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGACCTTTCTGGTAATAAATTAGAAGGTGAGATTCCTCAGACTCTTTACAACTTGACAAACCTGGAATCCCTTAACCTACATCATAACGAGCTTAATGGAAGCATCCCCCCAAGCCTAGGAAACCTATCAAGGATTCAATACCTAGATCTTTCACATAATTCACTTTCTGGCCCAATCCCTACTTCCCTTGGAAATTTAAATACCTTGACACATTTTGATCTCTCATTCAATAATCTGTCTGGTTTCATTCCTGAGATTGCAAACATACAGCGTTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCGTCCTTTGGACACCCCTTGCTTGGTAAACGGAGCTACATCGCCTTCATCTCCTGGGAAGGCTAAAGTTCTAAGCACCTCAGCAATCGTTGCAATTGTTGCTGCAGCTGTAATTCTCACTGGGGTTTGTTTGGTGACCATCATGAATATGGCGGCACGTGGTAGAAAAAAACAGGATGATCAGATTATGATTGTTGAGAGCACCCCTCTTGGGTCAACAGATTCAAATCTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGATAAAGAGTCTTTGATAGGTGGCGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAGGCGGGATCTCAATTGCAGTGAAGAAGCTCGAGACTATGGGAAGGATTAGAAACCAGGAGGAATTTGAGCATGAAATTGGGCGACTAGGCAATCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTATTATTGGTCCTCTTCAATGCATTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTGGGCTATGCTGGAACCAGTACTAGTAGAGGAAACAGGGAATTATATTGGTCTAGAAGGTTTCAAATTGCAGTGGGAACCGCAAGAGCCCTTGCTTATCTCCACCATGACTGTAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGACGACAAGTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTTTGACAAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGGCTGAGGCAGAGTGAGAAATGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTCTTGTGTGAATATGTAAGAGGTTTGTTAGAGACTAGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTACTGAGAACGAATTAATTCAGGTTATGAGATTGGGACTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGAGGTATCAGATTTAGGCATACATGGAAGGAGATTTGGATCAGGATCGACTTTGTGTGCAAGAGGGCAAGGGATAAAGATGTTACTCGGGCATTCAAAACGTAGAAAAGACGAAAGATAA 2739 0.4312 MRRHRAIHLSHALLCTFFYCLVIASAVTEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRLSGGIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPLALFRYCYKTRFVSLSHNNLAGSIPASLVNCFNLEGFDFSFNNLSGVVPSGLCGIPRLSYVSLRNNALSGSVQELISSCQSLEHLDFGSNRFTDLAPFSVLEMQNLTYLNLSYNGFGGHIPEISSCSGRLQILDASGNLLDGEIPTSITKCKSLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNFIGGMIPKGFGSVELLELLDLHNLNLVGQIPDDISNCKFLLGLDLSGNKLEGEIPQTLYNLTNLESLNLHHNELNGSIPPSLGNLSRIQYLDLSHNSLSGPIPTSLGNLNTLTHFDLSFNNLSGFIPEIANIQRFGASAFSNNPFLCGRPLDTPCLVNGATSPSSPGKAKVLSTSAIVAIVAAAVILTGVCLVTIMNMAARGRKKQDDQIMIVESTPLGSTDSNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETMGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMHLILSEFVPNGNLYDNLHGLGYAGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETSSASDCFDRNLLGFTENELIQVMRLGLICTSEDPLRRPSMAEVVQEVSDLGIHGRRFGSGSTLCARGQGIKMLLGHSKRRKDER 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02507 912 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vimu7g02507 912 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515
Vimu7g02507 912 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Vimu7g02507 912 FunFam Putative LRR receptor-like serine/threonine-protein kinase 675 880 - -
Vimu7g02507 912 Gene3D Ribonuclease Inhibitor 165 506 IPR032675 -
Vimu7g02507 912 PANTHER OS05G0588300 PROTEIN 209 331 - -
Vimu7g02507 912 SUPERFAMILY Protein kinase-like (PK-like) 598 873 IPR011009 -
Vimu7g02507 912 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Vimu7g02507 912 ProSiteProfiles Protein kinase domain profile. 597 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02507 912 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 505 - -
Vimu7g02507 912 CDD STKc_IRAK 603 878 - -
Vimu7g02507 912 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515
Vimu7g02507 912 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Vimu7g02507 912 Gene3D Ribonuclease Inhibitor 26 164 IPR032675 -
Vimu7g02507 912 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02507 912 SUPERFAMILY L domain-like 163 492 - -
Vimu7g02507 912 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 673 - -
Vimu7g02507 912 Gene3D Transferase(Phosphotransferase) domain 1 678 882 - -
Vimu7g02507 912 Gene3D Phosphorylase Kinase; domain 1 597 677 - -
Vimu7g02507 912 SUPERFAMILY L domain-like 72 160 - -
Vimu7g02507 912 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02507 Vimu-Chr7 21372095 21375033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02507 25 873 Receptor kinase-like Gene Family AT1G62950 65.501 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vimu7g02507 Pkinase 3.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02507 - - gmx:100805681 1542.32