Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02489 ATGGACCCACCCGTGTCGTGTGGTGTGCATGAGCGTGTGCGCATTGTAGCCTCGGACGTGGTCCAAGCGCCTCATTCTCCTTTCTCCACAAAAGCTATATATATGTGTGTGTGCCCCCTATTCTCCCTTCAACGACTAACTGAAAAACACAAACTCAAACTCAAAATCCAGACACTTGAACAGAACAACCCCATGGAACACGACTCAGAAACATCATGCGAAACAGGTTCTCCGACAACAGTTCAGAGTAGTGGGTATTCAGACGAGGAAGTGATACTCGCATCTTCGCGGCCGAAGAAGCGAGCTGGGAGAAGAGTGTTCAAGGAGACTAGGCACCCCGTGTACCGGGGAGTGCGACGGAGGAACAACAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAACAACTCACGGATTTGGCTCGGCACATACCCCACGCCGGAAATGGCTGCGCGGGCGCACGACGTTGCGGCCCTCGCGCTCCGGGGAAAGTCCGCCTGCCTCAATTTCGCCGACTCAGTGTGGCGCCTGTCGGTGCCTGACAGCACAGACGCGGAGGAGATACGGCGAGCGGCGGTGGAGGCTGCGGAGGCATTTATGGGTGAGGATGTGAGCCAACAGCAGAGGAGTGAAGGAATAGAAGAGCCCCCGCGACTGCAACAAGAAGAGATGTCGGAAGTTGAAGAGTTGCATGATTTGCTTATGCGAATTGCGAATGAGCCTTTGATGTCTCCTCCTCCTTGTGTGAGAGATGGTAGGGAGTGGAATGACGTGGAGATATTTGATGCTGAGGTTTCGCTGTGGAGCTTTTCAATTTGA 819 0.5397 MDPPVSCGVHERVRIVASDVVQAPHSPFSTKAIYMCVCPLFSLQRLTEKHKLKLKIQTLEQNNPMEHDSETSCETGSPTTVQSSGYSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLSVPDSTDAEEIRRAAVEAAEAFMGEDVSQQQRSEGIEEPPRLQQEEMSEVEELHDLLMRIANEPLMSPPPCVRDGREWNDVEIFDAEVSLWSFSI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02489 272 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Vimu7g02489 272 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Vimu7g02489 272 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Vimu7g02489 272 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Vimu7g02489 272 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Vimu7g02489 272 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677
Vimu7g02489 272 MobiDBLite consensus disorder prediction 201 220 - -
Vimu7g02489 272 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Vimu7g02489 272 Gene3D AP2/ERF domain 114 172 IPR036955 GO:0003700|GO:0006355
Vimu7g02489 272 MobiDBLite consensus disorder prediction 60 90 - -
Vimu7g02489 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 70 269 IPR045277 GO:0003700
Vimu7g02489 272 FunFam Ethylene-responsive transcription factor 2 113 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02489 Vimu-Chr7 21229142 21229960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02489 88 270 AP2-EREBP Transcription Factor Family AT1G63030 54.054 3.65e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g02489 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02489 - - gmx:100789097 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02489 7 21229142 21229960 Vimu7g02489 7 21229142 21229960 ECH
Vimu7g02489 7 21229142 21229960 Vimu7g02489 7 21229142 21229960 PCT