Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02488 ATGGCTCCCTCACCCTCTTCCAAGAGGCACCCACTCTACCGAGGAATCCGTTCCCGGGGAAGAAAATGGGTCTCCGAAATCCGCGAGCCGCGCAAGGCCTCCCGCATATGGCTCGGCACCTTCCCCACGCCGGAGATGGCCGCCGCCGCCTACGACGTCGCAGCATTGGCCTTGAAAGGCCACGGCGCTGTTCTCAACCTCCCTCACTCCGTCTCCAAGTATCAAATCCCTGCAACCAACTCTGCGGCGGATATCCGCACTGCTGCCTCTGCTGCGGCCACAATGATGAAGGCTGAAACTGAAGCTTCCCACAACATTGCATCACAAACTGAAACTACCCACATCGATGCGACAACCTGGTGGTTTGAAAATGATTTCCTTGACGAGGAAGCCATTTTCGGCATGCCAAGTCTTCTGGTTGACATGGCCGAGGGAATGCTTCTGTCGCCGCCCAGAATGATCCCGCCACCGTCCGATAACTCGCCGGAGAAACAAGCTGCAGAGACTTTGTGGAGTTATTTTTGA 525 0.5638 MAPSPSSKRHPLYRGIRSRGRKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGHGAVLNLPHSVSKYQIPATNSAADIRTAASAAATMMKAETEASHNIASQTETTHIDATTWWFENDFLDEEAIFGMPSLLVDMAEGMLLSPPRMIPPPSDNSPEKQAAETLWSYF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02488 174 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 173 IPR045277 GO:0003700
Vimu7g02488 174 MobiDBLite consensus disorder prediction 151 174 - -
Vimu7g02488 174 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Vimu7g02488 174 Pfam AP2 domain 11 61 IPR001471 GO:0003700|GO:0006355
Vimu7g02488 174 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Vimu7g02488 174 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Vimu7g02488 174 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Vimu7g02488 174 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02488 Vimu-Chr7 21221366 21221890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02488 7 173 AP2-EREBP Transcription Factor Family AT5G52020 53.143 3.69e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g02488 AP2 4.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02488 - - gmx:100811020 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02488 7 21221366 21221890 Vimu7g02488 7 21221366 21221890 ECH
Vimu7g02488 7 21221366 21221890 Vimu7g02488 7 21221366 21221890 PCT